[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : tktN
DDBJ      :tktN         transketolase
Swiss-Prot:             

Homologs  Archaea  38/68 : Bacteria  844/915 : Eukaryota  186/199 : Viruses  0/175   --->[See Alignment]
c.36.1
:263 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   11->235 1gpuA PDBj 1e-23 33.0 %
:RPS:PDB   3->246 2bfdA PDBj 3e-29 15.1 %
:RPS:SCOP  11->246 1ay0A1  c.36.1.10 * 7e-50 30.0 %
:HMM:SCOP  1->262 1l8aA1 c.36.1.10 * 1.9e-65 35.4 %
:RPS:PFM   7->246 PF00456 * Transketolase_N 1e-33 36.8 %
:HMM:PFM   7->260 PF00456 * Transketolase_N 7.4e-56 34.3 254/333  
:BLT:SWISS 4->251 TKTN_METJA 7e-47 40.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21358.1 GT:GENE tktN GT:PRODUCT transketolase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(530587..531378) GB:FROM 530587 GB:TO 531378 GB:DIRECTION - GB:GENE tktN GB:PRODUCT transketolase GB:PROTEIN_ID AAZ21358.1 GB:DB_XREF GI:71062355 GB:GENE:GENE tktN LENGTH 263 SQ:AASEQ MNKLIKISKKIRFTVCELSHKAKAAHLGSSLSCVDILSVIFFSNLLKFDIKKNTLDKFILSKGHAATALYACLALKGFISEKDLIKYGKNNSIYEEHPNKKINGVICSTGSLGHGLSFGCGVTLGEKIKKKNNKNLVLLSDGECNEGSVWEAAGFASSKKLNNLIALIDFNNWQATGRSKEIFGGEMKEKWKAFGWDIQEINGNDVNQVYRAIKKAKKSREKPTAIICNTIKGKGIKFMEDDNNWHYRVPNSKEIKMIKKIII GT:EXON 1|1-263:0| BL:SWS:NREP 1 BL:SWS:REP 4->251|TKTN_METJA|7e-47|40.7|248/274| TM:NTM 1 TM:REGION 29->50| SEG 127->135|kikkknnkn| SEG 253->262|keikmikkii| BL:PDB:NREP 1 BL:PDB:REP 11->235|1gpuA|1e-23|33.0|224/678| RP:PDB:NREP 1 RP:PDB:REP 3->246|2bfdA|3e-29|15.1|239/374| RP:PFM:NREP 1 RP:PFM:REP 7->246|PF00456|1e-33|36.8|239/275|Transketolase_N| HM:PFM:NREP 1 HM:PFM:REP 7->260|PF00456|7.4e-56|34.3|254/333|Transketolase_N| RP:SCP:NREP 1 RP:SCP:REP 11->246|1ay0A1|7e-50|30.0|233/335|c.36.1.10| HM:SCP:REP 1->262|1l8aA1|1.9e-65|35.4|260/415|c.36.1.10|1/1|Thiamin diphosphate-binding fold (THDP-binding)| OP:NHOMO 1713 OP:NHOMOORG 1068 OP:PATTERN 11-1--1111111111-111111------1-----11111111-----------11-111-111--11 124121111111111--11-11111311111111112-3211121121111142311111111-1244221-111---311111111111121111--11111211131311111111111111112112212122111111121121211131111111111111-221-2121121111111111111-1112222212212222223-221122111111113444331111111111111111111111-11----1--123--1--1-1111112321122-11322223323231111111111111111111222311127111111131312111111112111-21111111121112111-12-31111111111214451122322411111111113-223234222211222123333244162111122233111--------221112321111111111---------------1111211111211114441422111122321111111132232111114211123312211211112111111111111121212-1111131111233222311113112111112111111111111111121111221171111111111111111111111111111-1221111111132322422223233322-2222233222232222224565321114333333333333333212122221122122222222211111111111112112111122111111111222222111113111111123111221221111111111122222222222322111111111111111131111122--------111----1-11111111111121111111211113121111 11--211-311112122122231333311-11111-11-1-111112122234312111111112111111213222-2211111111-1322132545211122211222453321221223233242EO3-43322224225-2232131141112211-11111411611212111I111-142342222221111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 251 STR:RPRED 95.4 SQ:SECSTR ccHHHHHHHHHHHHHHHHHHHHHTTccccccccTTcHHHHHHHHHTcTTccTTcccEEEcccccHHHHHHTTccHHHHHHHHTcTTcTTTTcccccccccTTTTcccccccTTTHHHHHHHHHHHHHHHTccccEEEEEETTGGGcHHHHHHHHHHHHTTccEEEEEEEccEETTEEGGGTccccTTGGGTGGGTcEEEEEETTcHHHHHHHHHHHHHHHTccEEEEEEcccccccccHHHHHHHHccccH############ PSIPRED cHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccEEEEccccHHHHHHHHHHHcccccHHHHHHccccccccccccccccccEEccccHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHcHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccHHHHHHHHHHHc //