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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : tolB
DDBJ      :tolB         tolB protein
Swiss-Prot:TOLB_PELUB   RecName: Full=Protein tolB;Flags: Precursor;

Homologs  Archaea  5/68 : Bacteria  521/915 : Eukaryota  16/199 : Viruses  0/175   --->[See Alignment]
b.68.4b.68.7c.51.2
:446 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   57->444 2w8bB PDBj 3e-43 30.6 %
:RPS:PDB   34->444 1c5kA PDBj e-107 28.4 %
:RPS:SCOP  34->168 1c5kA2  c.51.2.1 * 8e-31 31.7 %
:RPS:SCOP  170->444 1c5kA1  b.68.4.1 * 5e-18 26.6 %
:HMM:SCOP  26->168 1crzA2 c.51.2.1 * 2.3e-35 48.4 %
:HMM:SCOP  160->442 1k32A2 b.68.7.1 * 8.2e-58 34.7 %
:RPS:PFM   23->136 PF04052 * TolB_N 5e-17 42.7 %
:RPS:PFM   290->322 PF07676 * PD40 8e-07 66.7 %
:HMM:PFM   7->136 PF04052 * TolB_N 6.1e-38 42.9 119/120  
:HMM:PFM   250->280 PF07676 * PD40 1.9e-07 41.9 31/39  
:HMM:PFM   289->324 PF07676 * PD40 2.2e-14 47.2 36/39  
:HMM:PFM   333->357 PF07676 * PD40 4.2e-06 40.0 25/39  
:HMM:PFM   376->404 PF07676 * PD40 1.6e-07 24.1 29/39  
:BLT:SWISS 1->446 TOLB_PELUB 0.0 100.0 %
:PROS 295->304|PS00152|ATPASE_ALPHA_BETA
:TM
:REPEAT 3|209->251|252->335|340->429
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21418.1 GT:GENE tolB GT:PRODUCT tolB protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 582046..583386 GB:FROM 582046 GB:TO 583386 GB:DIRECTION + GB:GENE tolB GB:PRODUCT tolB protein GB:PROTEIN_ID AAZ21418.1 GB:DB_XREF GI:71062415 GB:GENE:GENE tolB LENGTH 446 SQ:AASEQ MLLRYLFILFIIIPIKAFALIEVDITRGNLNPLPVAVSPLSIDNKSKENFKKILKQEDLGSEISIVVENNLRQSGLFNPLDKNAFLQEPDVANLKPRFEDWNLIKAQALVTGKVTFVDEKLRVEFRLWDVLAGKEMMALAFTTVPSNWRRVGHIITDKVYERLTGEKGYFDTRIIYVSEEGPKTKRIKKLAIMDQDGFNNKYLTLGNELVLTPRFSPTNQMVTYLSYFRNLPRVYLLDIETGMQEVVGDFPGMTFAPRFSPDGKKIIMSFAKDGNSDIYTMDLENRIVERITNHPSIDTSPSYSPDGKKITFNSDRSGYQQIYVMDSNGKNVKRISFGNGLYGTPVWSPRGDLIAFTKLHKGKFYIGVMRTDGTGERLLTENFYQEAPSWSPNGRVLIFYRETKTNSKGEGFSAKLWSIDLTGYNEKMVETETDASDPSWSSLLSN GT:EXON 1|1-446:0| SW:ID TOLB_PELUB SW:DE RecName: Full=Protein tolB;Flags: Precursor; SW:GN Name=tolB; OrderedLocusNames=SAR11_0597; SW:KW Complete proteome; Periplasm; Protein transport; Signal; Transport. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->446|TOLB_PELUB|0.0|100.0|446/446| GO:SWS:NREP 3 GO:SWS GO:0042597|"GO:periplasmic space"|Periplasm| GO:SWS GO:0015031|"GO:protein transport"|Protein transport| GO:SWS GO:0006810|"GO:transport"|Transport| PROS 295->304|PS00152|ATPASE_ALPHA_BETA|PDOC00137| TM:NTM 1 TM:REGION 3->25| NREPEAT 1 REPEAT 3|209->251|252->335|340->429| SEG 6->21|lfilfiiipikafali| BL:PDB:NREP 1 BL:PDB:REP 57->444|2w8bB|3e-43|30.6|376/409| RP:PDB:NREP 1 RP:PDB:REP 34->444|1c5kA|e-107|28.4|391/397| RP:PFM:NREP 2 RP:PFM:REP 23->136|PF04052|5e-17|42.7|103/121|TolB_N| RP:PFM:REP 290->322|PF07676|8e-07|66.7|33/34|PD40| HM:PFM:NREP 5 HM:PFM:REP 7->136|PF04052|6.1e-38|42.9|119/120|TolB_N| HM:PFM:REP 250->280|PF07676|1.9e-07|41.9|31/39|PD40| HM:PFM:REP 289->324|PF07676|2.2e-14|47.2|36/39|PD40| HM:PFM:REP 333->357|PF07676|4.2e-06|40.0|25/39|PD40| HM:PFM:REP 376->404|PF07676|1.6e-07|24.1|29/39|PD40| GO:PFM:NREP 2 GO:PFM GO:0015031|"GO:protein transport"|PF04052|IPR007195| GO:PFM GO:0042597|"GO:periplasmic space"|PF04052|IPR007195| RP:SCP:NREP 2 RP:SCP:REP 34->168|1c5kA2|8e-31|31.7|123/128|c.51.2.1| RP:SCP:REP 170->444|1c5kA1|5e-18|26.6|267/269|b.68.4.1| HM:SCP:REP 26->168|1crzA2|2.3e-35|48.4|128/0|c.51.2.1|1/1|TolB, N-terminal domain| HM:SCP:REP 160->442|1k32A2|8.2e-58|34.7|259/281|b.68.7.1|1/1|Tricorn protease N-terminal domain| OP:NHOMO 662 OP:NHOMOORG 542 OP:PATTERN ----------------------------------------------1--3112--------------- 25F--------------------------------------111-----------------1---11-----------------------11-2-----1---1421-331111111111111111111111111122222---4-1-------------------------------------------1----------------------------------------11----------------------------------------------------------------------------------------------------------------------2----------1----------7-11222111111-1111111111111111111111-1111111111112222222221121132211111111111111111111111111111-------1111111111111111-111222211111111111111111111111111111111111111121111111111111111111-------22111122111111111111111111111132333111111111111111111111111111111111111232312222232222322222223--12221------1111111111111111--111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111111111111---1111----------------------------------------------11- ---------------1---1---121--------------------1-----1----------------------------------------------------------------------------------------------------------------------12-1----------1121-32------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 401 STR:RPRED 89.9 SQ:SECSTR #################################EEEEcccEEccccc#########ccccccHHHHHHHHHHHTccEEEccGGGcccccccTT#TccHHHHTTTTcccEEEEEEEcTTccEEEEEEEEEcccTEEEEEEEEEEcGGGHHHHHHHHHHHHHHHHHcccccTTcEEEEEEEccccHcccEEEEEEETTccccEEEEEEcccEEEEEEcTTccEEEEEEcTTcccEEEEEETTTccEEEEEcccccEEEEEEcTTccEEEEEEcTTcccEEEEEETTTccEEEcccccccEEEEEEcTTccEEEEEEcTTcccEEEEEETTccccEEccccccEEEEEEEcTTccEEEEEEEETTEEEEEEEETTTccEEEcccccccEEEEEcTTccEEEEHHHHGGGEEEETTEEEEEEEETTccEEEccccccEEEEEEEcccc## DISOP:02AL 85-95| PSIPRED cHHHHHHHHHHHHHHcEEEEEEEEEEccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccHHHHHHccccEEEEEEEEEcccEEEEEEEEEEEEcccEEEEEEEEccHHHHHHHcHHHHHHHHHHHcccccccccEEEEEEEcccccccEEEEEEEEccccEEEEEEccccEEEEEEEcccccEEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEEccccEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEEEccccEEEEEEccccEEEEEEEcccccEEEEEEccccEEEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccccccccEEEEEEEEEcccccEEEEcccccEEEEEcccccc //