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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : tolC
DDBJ      :tolC         Outer membrane protein TolC
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  182/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
f.5.1
:432 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   29->269 1ek9A PDBj 1e-08 19.8 %
:RPS:PDB   26->424 1ek9A PDBj 6e-27 15.8 %
:RPS:SCOP  23->424 1ek9A  f.5.1.1 * 4e-28 16.3 %
:HMM:SCOP  1->424 1wp1A_ f.5.1.1 * 3.6e-68 27.2 %
:RPS:PFM   25->215 PF02321 * OEP 1e-14 27.7 %
:HMM:PFM   25->215 PF02321 * OEP 3e-33 28.5 186/188  
:HMM:PFM   237->422 PF02321 * OEP 5.6e-28 27.0 185/188  
:BLT:SWISS 88->264 APRF_PSEAE 1e-10 22.7 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21460.1 GT:GENE tolC GT:PRODUCT Outer membrane protein TolC GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 624419..625717 GB:FROM 624419 GB:TO 625717 GB:DIRECTION + GB:GENE tolC GB:PRODUCT Outer membrane protein TolC GB:PROTEIN_ID AAZ21460.1 GB:DB_XREF GI:71062457 GB:GENE:GENE tolC LENGTH 432 SQ:AASEQ MKKIILISLAIILFNGKAFSVPLSKALLQAYNENPVLNAERENIQVSREDVKISRSEFLPSVTLSGSKSQENTEKLTDGTGANSSFTEVDPKTQSINIEQKLFQGFAGIASMEKSKIGLTLAEAKLLKTEQEILYQAIEAYSGLVFSDEKLKINQDNVNLLKRQVETNQARLERGQITISDLAQSESSLAGAQAQFLQAKNETITAKLTYEKIIGPIVNTNTLSKNSDLTFELPKDLNEAIEISKTTNPNLIISRLEYEQSEQDVTIARSDLSPSASLSFNSSKSDNVSSSIGERDKEILKATISWPIFNGGKNTASLNKSKNLKNRKKLLLDNTLKTNDANIASAWSSFQVSKSLLNSVTAQVKAAETANEGITVEYETGLGRSTLDVIQSNSILLNSKISLANSERNYLLSQFKLLQAIGLLNSNYLKIQ GT:EXON 1|1-432:0| BL:SWS:NREP 1 BL:SWS:REP 88->264|APRF_PSEAE|1e-10|22.7|176/481| COIL:NAA 25 COIL:NSEG 2 COIL:REGION 155->176| COIL:REGION 180->182| SEG 4->13|iilislaiil| SEG 270->291|sdlspsaslsfnssksdnvsss| SEG 313->342|kntaslnksknlknrkkllldntlktndan| SEG 390->406|iqsnsillnskislans| BL:PDB:NREP 1 BL:PDB:REP 29->269|1ek9A|1e-08|19.8|232/423| RP:PDB:NREP 1 RP:PDB:REP 26->424|1ek9A|6e-27|15.8|387/423| RP:PFM:NREP 1 RP:PFM:REP 25->215|PF02321|1e-14|27.7|188/189|OEP| HM:PFM:NREP 2 HM:PFM:REP 25->215|PF02321|3e-33|28.5|186/188|OEP| HM:PFM:REP 237->422|PF02321|5.6e-28|27.0|185/188|OEP| GO:PFM:NREP 2 GO:PFM GO:0005215|"GO:transporter activity"|PF02321|IPR003423| GO:PFM GO:0006810|"GO:transport"|PF02321|IPR003423| RP:SCP:NREP 1 RP:SCP:REP 23->424|1ek9A|4e-28|16.3|393/428|f.5.1.1| HM:SCP:REP 1->424|1wp1A_|3.6e-68|27.2|419/0|f.5.1.1|1/1|Outer membrane efflux proteins (OEP)| OP:NHOMO 215 OP:NHOMOORG 182 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------1-----------------1---------------1-2-2----11------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------11-322221111222241122122111111111111-11112111111----1--1---11111111---1--111111111111121121111-11111-----1--1-1--1--1----11122------1----1-----------------------1---------------1--1-------------1--1111-1122--211---1-----1---------111----------------------11--11-1-11--1111111111111111111--------------1--------------------------------------22--1----------------------------------------1---------1----1---------------111111-----1--1-112-11111-------------11--1-----13111----------------2-------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 401 STR:RPRED 92.8 SQ:SECSTR ######################HHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHGGGccEEEEEEEEEEEEccccTccccTTcEEEEEEEEEEEEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcTTTccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHGGGccEEEEEEEEEEEccEEEcTTccEEEEEEEEEEcccccTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTc#ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcc######## DISOP:02AL 75-84| PSIPRED cHHHHHHHHHHHHccHHcccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccccccccccccccccEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccc //