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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : trmU
DDBJ      :trmU         tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
Swiss-Prot:MNMA_PELUB   RecName: Full=tRNA-specific 2-thiouridylase mnmA;         EC=2.8.1.-;

Homologs  Archaea  0/68 : Bacteria  896/915 : Eukaryota  121/199 : Viruses  0/175   --->[See Alignment]
c.26.2
:371 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   32->370 2deuA PDBj 3e-42 33.6 %
:RPS:PDB   18->371 2detA PDBj 1e-79 34.5 %
:RPS:SCOP  14->272 1q15A1  c.26.2.1 * 3e-32 14.8 %
:HMM:SCOP  14->258 2c5sA1 c.26.2.6 * 2.3e-50 35.2 %
:RPS:PFM   16->369 PF03054 * tRNA_Me_trans 2e-66 39.7 %
:HMM:PFM   18->369 PF03054 * tRNA_Me_trans 7.6e-116 43.9 344/356  
:BLT:SWISS 1->371 MNMA_PELUB 0.0 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21645.1 GT:GENE trmU GT:PRODUCT tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 798049..799164 GB:FROM 798049 GB:TO 799164 GB:DIRECTION + GB:GENE trmU GB:PRODUCT tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase GB:PROTEIN_ID AAZ21645.1 GB:DB_XREF GI:71062642 GB:GENE:GENE trmU LENGTH 371 SQ:AASEQ MTKLNSIGIAKDPKDTLVIVAMSGGVDSSTVAAMMKNEGYNVIGITLKLYNDSKETASSKQCCAGQDIMDAKRVADKLKIEHKILYYQNKFKEGVIDNFIDSYLNGETPIPCVQCNKTVKFTDLFEEAKRLNADALVTGHYVKSITEKDNTDMYRGIDLNRDQSYFLFNTTKDQLNFLRFPLGNLLKDETRNIARELDLNVADKPDSQDICFVPNGDYASVIEKFRPNSFSKGNIKNMNGEVIGVHDGIINYTIGQRKGIGVSDKNPLYVVKIIADKNEIIVGAKEHLVKTKINLKDLNIITNDQNDFKNELFVKVRSTGRLIKAKIDINDTNANVNLLEEEHGIAPGQACVFYAKNNNGYKVLGGGWIKS GT:EXON 1|1-371:0| SW:ID MNMA_PELUB SW:DE RecName: Full=tRNA-specific 2-thiouridylase mnmA; EC=2.8.1.-; SW:GN Name=mnmA; OrderedLocusNames=SAR11_0828; SW:KW ATP-binding; Complete proteome; Cytoplasm; Disulfide bond;Nucleotide-binding; RNA-binding; Transferase; tRNA processing;tRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->371|MNMA_PELUB|0.0|100.0|371/371| GO:SWS:NREP 7 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| GO:SWS GO:0008033|"GO:tRNA processing"|tRNA processing| GO:SWS GO:0000049|"GO:tRNA binding"|tRNA-binding| BL:PDB:NREP 1 BL:PDB:REP 32->370|2deuA|3e-42|33.6|327/364| RP:PDB:NREP 1 RP:PDB:REP 18->371|2detA|1e-79|34.5|345/365| RP:PFM:NREP 1 RP:PFM:REP 16->369|PF03054|2e-66|39.7|345/348|tRNA_Me_trans| HM:PFM:NREP 1 HM:PFM:REP 18->369|PF03054|7.6e-116|43.9|344/356|tRNA_Me_trans| RP:SCP:NREP 1 RP:SCP:REP 14->272|1q15A1|3e-32|14.8|236/287|c.26.2.1| HM:SCP:REP 14->258|2c5sA1|2.3e-50|35.2|213/0|c.26.2.6|1/1|Adenine nucleotide alpha hydrolases-like| OP:NHOMO 1116 OP:NHOMOORG 1017 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-111111111111111111111111111111111111111111111111111-------111111111133331111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112211111111111111111111121111111111111111111111111111111---1111111111111111111111111111111111111111111111111111222222212111111111121111111111111111112221122121111111111111111111111111111111111-111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111212111111111111212111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111211111111111111111111111-111111-11111111111111111111111111111111 ----111-------1-----------------------------------------------11111111111111111111111111-111-11111111-1111-22122111-2111--1112-21471-212111-21111111--11-2-11121--1111-114A11-32112I222223121-11222121- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 362 STR:RPRED 97.6 SQ:SECSTR ########HHHHHTTccEEEEccccHHHHHHHHHHHHHccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHTcccccccTHHHHHHHTHHHHHHHHHTTccccTHHHHHHHTTTTHHHHHHTTccccEEEcccccEEEEETTEEEEEccccGGGccGGGGGcccTHHHHHEEccGGGccHHHHHHHHHHHTcTTcccccccccTTcccccHHHHHTTTccccccccccccTTccccccccccTTccTTccccccccccccEEEEEccTTTTccEEEEcTTGEEEEEEEEccccTTccccccEEEEEEEccTTcccEEEEEEcccccEEEEEEEEEETccTTcEEEEEETT#ETTEEEEEEEEEE DISOP:02AL 1-2, 7-13| PSIPRED ccccccccccccccccEEEEEEcccHHHHHHHHHHHHccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccEEEEccccEEEEccccEEEEEEEccccccEEEEccccHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccccccEEEcccccEEEEEccEEEEEcEEEEcccccccccEEEEEEEccccEEEEccccccEEEEEEEEEEEEccccccccccEEEEEEEEccccEEEEEEEEccEEEEEEcccccccccccEEEEEcccccccEEEEcEEEcc //