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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : tspo
DDBJ      :tspo         TspO/MBR family
Swiss-Prot:             

Homologs  Archaea  10/68 : Bacteria  99/915 : Eukaryota  21/199 : Viruses  0/175   --->[See Alignment]
:155 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   10->144 PF03073 * TspO_MBR 5e-14 33.6 %
:HMM:PFM   11->151 PF03073 * TspO_MBR 3.2e-42 37.4 139/144  
:BLT:SWISS 7->144 CRTK_RHOCA 2e-12 25.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21494.1 GT:GENE tspo GT:PRODUCT TspO/MBR family GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 658833..659300 GB:FROM 658833 GB:TO 659300 GB:DIRECTION + GB:GENE tspo GB:PRODUCT TspO/MBR family GB:PROTEIN_ID AAZ21494.1 GB:DB_XREF GI:71062491 GB:GENE:GENE tspo LENGTH 155 SQ:AASEQ MLKNKFLSFLLFALVTFSASAIGGLATVGFKEPWYSLIIKPSFNPPDWIFAPVWTTLYFFMTIAIWKFWHSKNRDMNTIYLYFIHLIFNTTWSIVFFVFHKIVLAMIVLVILILLIIILIIRFKRVNLYSYYLMIPYLLWCLFALLLNISLIILN GT:EXON 1|1-155:0| BL:SWS:NREP 1 BL:SWS:REP 7->144|CRTK_RHOCA|2e-12|25.4|138/160| TM:NTM 5 TM:REGION 7->29| TM:REGION 44->66| TM:REGION 78->100| TM:REGION 103->122| TM:REGION 132->154| SEG 102->121|ivlamivlvililliiilii| SEG 145->154|lllnisliil| RP:PFM:NREP 1 RP:PFM:REP 10->144|PF03073|5e-14|33.6|134/145|TspO_MBR| HM:PFM:NREP 1 HM:PFM:REP 11->151|PF03073|3.2e-42|37.4|139/144|TspO_MBR| GO:PFM:NREP 1 GO:PFM GO:0016021|"GO:integral to membrane"|PF03073|IPR004307| OP:NHOMO 143 OP:NHOMOORG 130 OP:PATTERN -----------------------1---1---------------111111-1-1--------------- 1-------------1------1--1-------1--------------------11---------1--------------------------1---------11-1---11--------------1111211111-1-----------------------------------------------------------------------------------------------------------------------1----------------1---1-------------------------------------------------11-------1-1-----111--------1---------------------1---------12----111-1-------------11-11-21--1--1111--21-1111-------1--1----------1---1--1-----------------------------1--11-------------------1--------------------1--------------------------1-----1--------------------------1-1--------------------------------------------------------------1-1--------------------------------------------------------------------------------------------1-----11-----1-----------------------------------1------11111--11111----------------111111--------------------------------------------------------1-------1- --------------1----------------------------------------------------------------------------------------------------1-------1-------------------------------1111----111--111--221-------135-----2--1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-3| PSIPRED cccccHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcc //