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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : typA
DDBJ      :typA         GTP-binding protein
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  912/915 : Eukaryota  198/199 : Viruses  0/175   --->[See Alignment]
b.43.3c.37.1d.58.11
:608 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->289 3degC PDBj 6e-31 33.1 %
:BLT:PDB   303->599 3e3xA PDBj 1e-42 41.1 %
:RPS:PDB   44->558 3cb4D PDBj 8e-50 18.5 %
:RPS:SCOP  3->172 1n0uA2  c.37.1.8 * 7e-39 39.3 %
:RPS:SCOP  181->300 1n0uA1  b.43.3.1 * 6e-10 16.7 %
:RPS:SCOP  303->388 1fnmA4  d.58.11.1 * 1e-11 26.0 %
:RPS:SCOP  400->508 1n0uA5  d.58.11.1 * 7e-13 12.1 %
:HMM:SCOP  3->220 1f60A3 c.37.1.8 * 7e-59 43.2 %
:HMM:SCOP  151->301 1n0uA1 b.43.3.1 * 3.9e-24 31.3 %
:HMM:SCOP  303->388 1wdtA5 d.58.11.1 * 9.2e-15 31.2 %
:HMM:SCOP  400->515 1n0uA5 d.58.11.1 * 8.7e-26 29.3 %
:RPS:PFM   5->143 PF00009 * GTP_EFTU 2e-28 46.8 %
:RPS:PFM   399->480 PF00679 * EFG_C 9e-04 22.0 %
:RPS:PFM   486->554 PF00497 * SBP_bac_3 4e-04 33.3 %
:HMM:PFM   4->195 PF00009 * GTP_EFTU 4.2e-57 42.3 182/189  
:HMM:PFM   399->480 PF00679 * EFG_C 3.2e-21 32.9 82/89  
:HMM:PFM   222->290 PF03144 * GTP_EFTU_D2 9.1e-08 26.5 68/74  
:BLT:SWISS 4->603 TYPA_HELPJ e-155 46.2 %
:PROS 44->59|PS00301|EFACTOR_GTP
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20987.1 GT:GENE typA GT:PRODUCT GTP-binding protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 168376..170202 GB:FROM 168376 GB:TO 170202 GB:DIRECTION + GB:GENE typA GB:PRODUCT GTP-binding protein GB:NOTE TypA GB:PROTEIN_ID AAZ20987.1 GB:DB_XREF GI:71061984 GB:GENE:GENE typA LENGTH 608 SQ:AASEQ MSNNIRNITIIAHVDHGKTTMIDNLMKQSGSFRENEVVDERLMDSGELEKERGITILAKPASIDWQGTRVNIIDTPGHRDFAAEVERVLSMADGALLLIDSAEGVMPQTKFVLAKALKQGLKPIVVINKLDKADQRANEVLDETFDLFVSLDANEEQLDFPVMYASGRSGWADKEVDGPRENLHPLLDLIIEHVKPADLDKTKPFAMLSTLLYADSFLGRSLVGKISQGTAKANQAIKAINLKGEKVDEGRLTKIFRYEGTKKVPIEVGEAGDIVVIAGLEKANVADTICDLEVNDPLPATPIDPPTMSITISVNSSPLAGTEGKKLTSTQIRDRLVTEAQNNVGISFSQNANVDAFVISGRGELMLEILLTQMRREGFEMTVSPPKVLYQKDDNGNRLEPIEEITVDVDEEFSSKIIDSMNRRKGKLLDLKDTGKDKKRLIFHAPTRGLMGYTSRFLTLTKGTGVINRIFHGYGKFEGEMDGRKNGALISMANGKAVAFAIFNLQARGEMFVTHNDPVYEGMIVGLAPKPGDMIINVMKGKQLTNMRTQGTDENVVLTPVRQMSIAEQLSMLNTDEALEITPKSLRLRKAILNPNDRKKNEKSGTPL GT:EXON 1|1-608:0| BL:SWS:NREP 1 BL:SWS:REP 4->603|TYPA_HELPJ|e-155|46.2|597/599| PROS 44->59|PS00301|EFACTOR_GTP|PDOC00273| SEG 423->441|rrkgklldlkdtgkdkkrl| BL:PDB:NREP 2 BL:PDB:REP 4->289|3degC|6e-31|33.1|266/545| BL:PDB:REP 303->599|3e3xA|1e-42|41.1|265/267| RP:PDB:NREP 1 RP:PDB:REP 44->558|3cb4D|8e-50|18.5|480/525| RP:PFM:NREP 3 RP:PFM:REP 5->143|PF00009|2e-28|46.8|139/183|GTP_EFTU| RP:PFM:REP 399->480|PF00679|9e-04|22.0|82/88|EFG_C| RP:PFM:REP 486->554|PF00497|4e-04|33.3|69/222|SBP_bac_3| HM:PFM:NREP 3 HM:PFM:REP 4->195|PF00009|4.2e-57|42.3|182/189|GTP_EFTU| HM:PFM:REP 399->480|PF00679|3.2e-21|32.9|82/89|EFG_C| HM:PFM:REP 222->290|PF03144|9.1e-08|26.5|68/74|GTP_EFTU_D2| GO:PFM:NREP 6 GO:PFM GO:0003924|"GO:GTPase activity"|PF00009|IPR000795| GO:PFM GO:0005525|"GO:GTP binding"|PF00009|IPR000795| GO:PFM GO:0005525|"GO:GTP binding"|PF00679|IPR000640| GO:PFM GO:0005215|"GO:transporter activity"|PF00497|IPR001638| GO:PFM GO:0006810|"GO:transport"|PF00497|IPR001638| GO:PFM GO:0030288|"GO:outer membrane-bounded periplasmic space"|PF00497|IPR001638| RP:SCP:NREP 4 RP:SCP:REP 3->172|1n0uA2|7e-39|39.3|168/323|c.37.1.8| RP:SCP:REP 181->300|1n0uA1|6e-10|16.7|120/138|b.43.3.1| RP:SCP:REP 303->388|1fnmA4|1e-11|26.0|77/79|d.58.11.1| RP:SCP:REP 400->508|1n0uA5|7e-13|12.1|107/114|d.58.11.1| HM:SCP:REP 3->220|1f60A3|7e-59|43.2|206/239|c.37.1.8|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 151->301|1n0uA1|3.9e-24|31.3|131/0|b.43.3.1|1/1|Translation proteins| HM:SCP:REP 303->388|1wdtA5|9.2e-15|31.2|77/0|d.58.11.1|1/1|EF-G C-terminal domain-like| HM:SCP:REP 400->515|1n0uA5|8.7e-26|29.3|116/0|d.58.11.1|1/1|EF-G C-terminal domain-like|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h9EBD9ICCVMCCBBCGF*FEBBDXNac8MIFFGCBBB ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 608 STR:RPRED 100.0 SQ:SECSTR ccccEEEEEEEEcTTccHHHHHHHHHHHHHccccccEEEEEEEHHHHHHHTTccEEEEEEEcTTccEEEEEEEEccccGGGHHHHHHHHHHccEEEEEEETTTcccTHHHHHHHHHHHTTcEEEEEEEcTTcTTccHHHHHHHHHHHHHHccHHTccccTTcEEEcTTTcTHHHcHHHHccTHHHHHHHHHHHcccccccTTcccEEEEEEEEEETTTEEEEEEEEEEccEEcccEEEEEETTTccEEEccEEEEEcccEEEccEEcTTcEEEEEcccccGGGccTTcEEccTTcEEEcccccccccTTcccccccEEEEEEEccGGGHHHHHHHHHHHHTTccccEEEEEEETTEEEEEEccHHHHHHHHHHHHHTcccEEEcccEEcEcGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTcEEEEEEccTTEEEEEEEEEHHHHHTTTHHHHHHHTTcccEEEEEEEEEEEccEEEEEEETTEEEEccEEEEEEEEGGGHHHHHHHHHHHHHHHccccccccEEccEcEEEEEEETTEEEEEccccTTcccccHHHHHHHHHTcEEEEEEEEEEEEEEcGGGHHHHHHHHHTTTcEEEcccEE DISOP:02AL 1-2, 595-608| PSIPRED ccccccEEEEEEEccccHHHHHHHHHHHHcccccccccHHHHcccHHHHHHcccEEEEEEEEEEEccEEEEEEEccccEEcHHHHHHHHHHHccEEEEEEccccccHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccEEEEEEEEEEEEccccEEEEEEccccEEEEEEEEEEEEEccccEEEEcEEccccEEEEEcccEEEcccEEEccccccccccccccccEEEEEEEEccccccccHHHHccHHHHHHHHHHHHHcccEEEEEEcccccEEEEEEEcHHHHHHHHHHHHHccccEEEcccEEEEEEEccccccccEEEEEEEccccccccHHccccccccEEEEEEEcccccEEEEEEEccccccccHHHHHHHHccccEEEEEEcccccccccHHHEEccEEEEccccccHHHHHcccccccEEEEcccccEEEEEEEEEccccccccHHHHcccEEEEEEEcccccEEEEEccEEEEHHHHHHHcccccEEEEcHHEEEEEcccccHHHHHHHHcccccc //