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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : tyrS
DDBJ      :tyrS         tyrosyl-tRNA synthetase
Swiss-Prot:SYY_PELUB    RecName: Full=Tyrosyl-tRNA synthetase;         EC=6.1.1.1;AltName: Full=Tyrosine--tRNA ligase;         Short=TyrRS;

Homologs  Archaea  0/68 : Bacteria  906/915 : Eukaryota  179/199 : Viruses  0/175   --->[See Alignment]
c.26.1d.66.1
:409 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->307 1jilA PDBj 3e-75 46.2 %
:RPS:PDB   2->311 2akeA PDBj 4e-47 18.5 %
:RPS:PDB   287->387 3bbnD PDBj 2e-08 10.6 %
:RPS:SCOP  2->313 1jiiA  c.26.1.1 * e-105 45.0 %
:RPS:SCOP  327->387 1h3eA2  d.66.1.4 * 1e-04 21.3 %
:HMM:SCOP  1->320 1jilA_ c.26.1.1 * 7.2e-96 45.1 %
:HMM:SCOP  327->410 1h3fA2 d.66.1.4 * 1.2e-15 33.8 %
:RPS:PFM   29->305 PF00579 * tRNA-synt_1b 1e-30 40.0 %
:HMM:PFM   29->320 PF00579 * tRNA-synt_1b 1.2e-78 35.7 280/292  
:HMM:PFM   346->386 PF01479 * S4 1.3e-08 34.1 41/48  
:BLT:SWISS 1->409 SYY_PELUB 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21554.1 GT:GENE tyrS GT:PRODUCT tyrosyl-tRNA synthetase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(719363..720592) GB:FROM 719363 GB:TO 720592 GB:DIRECTION - GB:GENE tyrS GB:PRODUCT tyrosyl-tRNA synthetase GB:PROTEIN_ID AAZ21554.1 GB:DB_XREF GI:71062551 GB:GENE:GENE tyrS LENGTH 409 SQ:AASEQ MNKFLKEFKDRGFFYQCTGEENLSQLLDKEKIRAYIGFDCTAESLHVGSLLQIMCLRLLQKHGHQPIVLLGGGTTRIGDPSGKDKTRTILSEDEIEKNINNIEKILKNFLDDKDPETKPIFVNNYTWLKNLNYISFLRDVGKHFTINKMLSFDSVKIRLEREQSLSYMEFNYMILQAYDFLELNKKEKCMLQIGGSDQWGNIVNGVDLIKRYSNNHVYGLTTPLITLASGAKMGKTESGAVWLDKKFLSSYDYWQFWRNIDDRDVLKFLKIFTDINVDEIENIKDDNINELKILLANKATSMLHGEDEARKCQETAKQTFSENSLGDNLPTTQINKKMLDDNISILDLVILSKLESSKSEIRRLIKGNGIKINGQAISDEKFLITEDLFKSSLIKLSLGKKKHIKVELI GT:EXON 1|1-409:0| SW:ID SYY_PELUB SW:DE RecName: Full=Tyrosyl-tRNA synthetase; EC=6.1.1.1;AltName: Full=Tyrosine--tRNA ligase; Short=TyrRS; SW:GN Name=tyrS; OrderedLocusNames=SAR11_0735; SW:KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm;Ligase; Nucleotide-binding; Protein biosynthesis; RNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->409|SYY_PELUB|0.0|100.0|409/409| GO:SWS:NREP 7 GO:SWS GO:0004812|"GO:aminoacyl-tRNA ligase activity"|Aminoacyl-tRNA synthetase| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| SEG 92->108|edeiekninniekilkn| SEG 390->405|kssliklslgkkkhik| BL:PDB:NREP 1 BL:PDB:REP 2->307|1jilA|3e-75|46.2|303/323| RP:PDB:NREP 2 RP:PDB:REP 2->311|2akeA|4e-47|18.5|292/373| RP:PDB:REP 287->387|3bbnD|2e-08|10.6|94/199| RP:PFM:NREP 1 RP:PFM:REP 29->305|PF00579|1e-30|40.0|260/279|tRNA-synt_1b| HM:PFM:NREP 2 HM:PFM:REP 29->320|PF00579|1.2e-78|35.7|280/292|tRNA-synt_1b| HM:PFM:REP 346->386|PF01479|1.3e-08|34.1|41/48|S4| GO:PFM:NREP 6 GO:PFM GO:0000166|"GO:nucleotide binding"|PF00579|IPR002305| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF00579|IPR002305| GO:PFM GO:0005524|"GO:ATP binding"|PF00579|IPR002305| GO:PFM GO:0005737|"GO:cytoplasm"|PF00579|IPR002305| GO:PFM GO:0006412|"GO:translation"|PF00579|IPR002305| GO:PFM GO:0006418|"GO:tRNA aminoacylation for protein translation"|PF00579|IPR002305| RP:SCP:NREP 2 RP:SCP:REP 2->313|1jiiA|e-105|45.0|309/319|c.26.1.1| RP:SCP:REP 327->387|1h3eA2|1e-04|21.3|61/81|d.66.1.4| HM:SCP:REP 1->320|1jilA_|7.2e-96|45.1|317/323|c.26.1.1|1/1|Nucleotidylyl transferase| HM:SCP:REP 327->410|1h3fA2|1.2e-15|33.8|80/0|d.66.1.4|1/1|Alpha-L RNA-binding motif| OP:NHOMO 1184 OP:NHOMOORG 1085 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111111111211111111111111111111111111111111111111111111111111111121112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111122222222122222211221222211121111111111111111111111111111111212111111111111111111111111111111111111111111111111111111111111221111111122222222222211221111211111111122111111111111111111111111111111111111111111111111111-111111111111111111121111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112211111112111111111111111111111-111111111111111111111111-111-11111111111111111111111222111111111111111111111111111111111111111111111111111111111111111111-11111111111111111222211111111111111111111111111122222221221111111-11111111111111111111111111111111-11111111111111111111111111111111 11--111-1-----111111111111111111111111-21111111111111111111111111111-1111111112111111111-11-11111111111111-121211111-11-11111111-151-11111111111-111--11141111212111111111612221111A1111111121111111211 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 386 STR:RPRED 94.4 SQ:SECSTR #TccccHHHHTTcEEEEEcHHHHHHHHTTccEEEEEEEccccccccHHHHHHHHHHHHHHHHHTccEEEEcHHHHEcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHTTTccTTcEEEEEHHHHHTTccHHHHHHHHHHTccHHHHccHHHHHHHHcccTTccHHHHTHHHHHHGGGcHTTccccEEEEEEEGGGHHHHHHHHHHHHHTTccccEEEEEccTTcccccccTTcGGGcccTccccccHHHHHHHcccTTTccHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHTcHHHHHHHHHcccccccTTTTTTHccHHHHccTTTTTTTTTcccccHHHHHHHHTTcEEETTEEcccTTccccTT###################### DISOP:02AL 153-164| PSIPRED cHHHHHHHHHcccEEEcccHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEEccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEcHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHcccccEEEEEcccEEcccccEEcccccccEEEccccccHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHccccccccHHHccccccHHHHHHHcccccccHHHHHHHHcccEEEccEEEccHHccccHHHccccEEEEEEcccEEEEEEEc //