[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ung
DDBJ      :ung          uracil-DNA glycosylase
Swiss-Prot:             

Homologs  Archaea  26/68 : Bacteria  128/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.18.1
:224 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   11->223 2d3yA PDBj 3e-39 39.3 %
:RPS:PDB   5->224 2d3yA PDBj 2e-35 36.0 %
:RPS:SCOP  5->224 1l9gA  c.18.1.2 * 2e-24 28.3 %
:HMM:SCOP  14->224 1l9gA_ c.18.1.2 * 6.7e-39 32.6 %
:RPS:PFM   50->211 PF03167 * UDG 2e-07 36.4 %
:HMM:PFM   48->217 PF03167 * UDG 2e-32 37.2 145/150  
:BLT:SWISS 7->223 Y1105_MYCLE 3e-36 37.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21689.1 GT:GENE ung GT:PRODUCT uracil-DNA glycosylase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(841141..841815) GB:FROM 841141 GB:TO 841815 GB:DIRECTION - GB:GENE ung GB:PRODUCT uracil-DNA glycosylase GB:PROTEIN_ID AAZ21689.1 GB:DB_XREF GI:71062686 GB:GENE:GENE ung LENGTH 224 SQ:AASEQ MSIKFKKLNNSIVKCKSCPRLIEFSKKISVKKRKQNMKETYWAKPVTGFGDINAKLLIVGLAPAAHGGTRTGRAFTGDKSGDFLFNCLFKANISNRSTSTHIDDGLKLNKTYITNILKCVPPEDKPLKNELINCSTFFKNELILLKNLKVIIALGKVSFDNCIEFYKKNYHFDKKLIFIHGVKYLLPDNKILIPSYHPSPRNVNRKIINTQKMVSLLKKAKKII GT:EXON 1|1-224:0| BL:SWS:NREP 1 BL:SWS:REP 7->223|Y1105_MYCLE|3e-36|37.2|215/229| BL:PDB:NREP 1 BL:PDB:REP 11->223|2d3yA|3e-39|39.3|206/219| RP:PDB:NREP 1 RP:PDB:REP 5->224|2d3yA|2e-35|36.0|214/219| RP:PFM:NREP 1 RP:PFM:REP 50->211|PF03167|2e-07|36.4|132/147|UDG| HM:PFM:NREP 1 HM:PFM:REP 48->217|PF03167|2e-32|37.2|145/150|UDG| RP:SCP:NREP 1 RP:SCP:REP 5->224|1l9gA|2e-24|28.3|180/191|c.18.1.2| HM:SCP:REP 14->224|1l9gA_|6.7e-39|32.6|187/191|c.18.1.2|1/1|Uracil-DNA glycosylase-like| OP:NHOMO 156 OP:NHOMOORG 154 OP:PATTERN --1---1111111111-11--11-----1--------------------------11-111111--12 11111----------1111-11111111111111111-11111111---------1----111111111-------------1--------------------------------------------------1---1111----1-------11-------------------------------11-------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------1-----------1-111111111111111111111111111111111---------111-------------11111------------------111--111-----------------------------1--111----------------------------------------------------11-----------111--1------------------1---1-111111--------------------------------------------------------------11-1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------1-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 220 STR:RPRED 98.2 SQ:SECSTR ####HHHHHHHHTTccccHHHHHHHHHTTTTcGGGTTcccccccccccEEcTTccEEEEEccccTTTHHHHccTTTTcHHHHHHHHHHHHTTcccccccccTTcccccccEEEEEccccccGGGcccHHHHHHHHHHHHHHHHTcTTccEEEEEcHHHHHHHHHHHHHHHTccTTccccTTcEEEETTTEEEEEEccccHHHHHHTcccHHHHHHHHHHHHHHT DISOP:02AL 1-2| PSIPRED ccccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHccccccccccEEEccEEEEccccEEEEEEEcccHHcccccccHHHHHHHHHHHHHHHc //