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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : uvrA
DDBJ      :uvrA         excinuclease ABC chain A
Swiss-Prot:             

Homologs  Archaea  35/68 : Bacteria  892/915 : Eukaryota  18/199 : Viruses  0/175   --->[See Alignment]
c.37.1e.11.1
:959 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->950 2r6fA PDBj 0.0 56.7 %
:RPS:PDB   5->368 1bjtA PDBj 2e-65 11.0 %
:RPS:PDB   488->951 3dt2A PDBj 2e-31 8.8 %
:RPS:SCOP  1->392 1bgwA  e.11.1.1 * 6e-55 12.4 %
:RPS:SCOP  463->575 1e69A  c.37.1.12 * 6e-16 21.7 %
:RPS:SCOP  550->609 1g6hA  c.37.1.12 * 6e-04 34.0 %
:RPS:SCOP  644->926 1f2t.1  c.37.1.12 * 4e-21 18.3 %
:HMM:SCOP  2->578 1ii8.1 c.37.1.12 * 9.6e-52 24.5 %
:HMM:SCOP  620->924 1f2t.1 c.37.1.12 * 1.2e-47 22.3 %
:HMM:PFM   781->870 PF00005 * ABC_tran 8.9e-14 31.4 86/118  
:HMM:PFM   1->569 PF02463 * SMC_N 6.2e-09 26.6 207/220  
:HMM:PFM   748->780 PF00684 * DnaJ_CXXCXGXG 3.3e-05 30.3 33/79  
:HMM:PFM   646->678 PF01443 * Viral_helicase1 0.00011 50.0 30/226  
:BLT:SWISS 5->950 UVRA_RICFE 0.0 59.4 %
:PROS 496->510|PS00211|ABC_TRANSPORTER_1
:PROS 839->853|PS00211|ABC_TRANSPORTER_1
:REPEAT 2|413->615|772->957
:REPEAT 2|5->127|622->737
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21791.1 GT:GENE uvrA GT:PRODUCT excinuclease ABC chain A GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(962973..965852) GB:FROM 962973 GB:TO 965852 GB:DIRECTION - GB:GENE uvrA GB:PRODUCT excinuclease ABC chain A GB:PROTEIN_ID AAZ21791.1 GB:DB_XREF GI:71062788 GB:GENE:GENE uvrA LENGTH 959 SQ:AASEQ MIKKIVIKGAKEHNLKNVSVEIPKDQFVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLDKMKKPNVDLIEGLSPAIAIEQKNTSKNPRSTVATVTEIYDYMRVLYARAGVPYSPFTGKPITSQTITQIVDLIKKLPKKSTIYIYAPVVRGRKGEYRKDILSYKRRGFRKIKIDEVLYDIDKAPELDKKLKHDISVLIDRIVLNSNLGNRLAESIETAVNLSNGLVFVEYEDETLPQKFRKIEKLIYSTKFACPESGFTIEEIEPRLFSFNSPYGACAECEGIGIKLNVDPNLVVPDEKKSIADGAIEPWAKSTTLYYAQTLASIAKHYGFSLDEKWKKLPKKFKDVILFGSDEEEIKFVYDDGYEKYSHKKTFEGVINNLERRFLESDSEWKREAIAEYQSDSACEGCNGNRLKEEALCVKIDNQNISDVTKKSILDAANWFKGLEQNLDKRQFKIAEHILKEINERLTFLLNVGLEYLTLSRESGTLSGGEAQRIRLASQIGSGLTGVLYVLDEPSIGLHQKDNVKLINALKRLRDLGNTVIVVEHDTETMENADHIIDLGPEAGTNGGEIIAQGTYNEILKNKNSITGQYLSHKKYIEIPRTRRLAKNGRFVEINGASGNNLNNVNLKIPTGSFTCVTGVSGSGKSTLILQTLYHALNLTLNNKARKVPKAFKGYKGVELIDKIIDIDQSPIGRTPRSNPATYTGAFGPIRDWFTALPESKTRGYKPGRFSFNVKGGRCEACEGDGVITYEMHFLPDVYIQCDECKGTRYNRETLEIKFKDKSIADVLNMSVDEGCEYFENISNIKTKLLTLKKVGLGYIKIGQQATTLSGGEAQRIKLAKELSKRSTGRTMYILDEPTTGLHQHDIKKLLEILHTFVALGNTVVVIEHNLDVIKTADYIVDMGPEGGVKGGNIIAEGKPEDIIKIKGSYTGEFLKPMLEEKFKKKLKI GT:EXON 1|1-959:0| BL:SWS:NREP 1 BL:SWS:REP 5->950|UVRA_RICFE|0.0|59.4|946/955| PROS 496->510|PS00211|ABC_TRANSPORTER_1|PDOC00185| PROS 839->853|PS00211|ABC_TRANSPORTER_1|PDOC00185| NREPEAT 2 REPEAT 2|413->615|772->957| REPEAT 2|5->127|622->737| SEG 630->637|nnlnnvnl| SEG 816->828|ktklltlkkvglg| BL:PDB:NREP 1 BL:PDB:REP 4->950|2r6fA|0.0|56.7|871/884| RP:PDB:NREP 2 RP:PDB:REP 5->368|1bjtA|2e-65|11.0|347/679| RP:PDB:REP 488->951|3dt2A|2e-31|8.8|453/621| HM:PFM:NREP 4 HM:PFM:REP 781->870|PF00005|8.9e-14|31.4|86/118|ABC_tran| HM:PFM:REP 1->569|PF02463|6.2e-09|26.6|207/220|SMC_N| HM:PFM:REP 748->780|PF00684|3.3e-05|30.3|33/79|DnaJ_CXXCXGXG| HM:PFM:REP 646->678|PF01443|0.00011|50.0|30/226|Viral_helicase1| RP:SCP:NREP 4 RP:SCP:REP 1->392|1bgwA|6e-55|12.4|362/679|e.11.1.1| RP:SCP:REP 463->575|1e69A|6e-16|21.7|112/263|c.37.1.12| RP:SCP:REP 550->609|1g6hA|6e-04|34.0|47/254|c.37.1.12| RP:SCP:REP 644->926|1f2t.1|4e-21|18.3|258/288|c.37.1.12| HM:SCP:REP 2->578|1ii8.1|9.6e-52|24.5|339/370|c.37.1.12|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 620->924|1f2t.1|1.2e-47|22.3|287/0|c.37.1.12|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1361 OP:NHOMOORG 945 OP:PATTERN --------111-1111--------11111111111---1111112112-2111-1-----------11 2341432222222211111-12111311111124443233122232132222333213112232322244432224331122111111222223222--2222324242311111111111111222222222223222221113111111111111111111111111111111111111112121111111122222221121122122111112211122113222222231111111111111133224223133112223322332112221111111111211111111112111111111111111111111111113321555457414135111111321111111133311111112221121423111112111112111111111122222222221-222221121111111122111211111111111111111212222221112111111111111--11111111111111111111211112222222222322222324322221222323221122222322232222212111111111111111122121211111111111121112211111114412111111111111111-11111111111111211112121111111111111111112--12222------11121111111111111-11-1111111111111111111111111111111111111111111111111-111111111111--1111111111111112111211111-111121112211121111111222212222111111111111112111121121111132222221111111111111111111111111111111-1-11111111111111111111122111111223 -----1---------1-----------------------------------------11111------------------------------------------1--1-----2-------------------------------------1--------2--21---------1----------1--1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 959 STR:RPRED 100.0 SQ:SECSTR cccHHcccTTTcccHHHHHHHHHHHHHTccccEEHHHHHHHHHHHTcccccccHHHHHHHHHcccTTccccccEEEEccccccTTTTcTTEEEEcccGGGcEEEEcTTHHHHccGGGGGGccEcEEEEccccHHHHHHHHHHHHTTccccccccccTTcccEEEEEEETTEEEEEcEEEEEETTEEEEEEccTTccHHHHHHHHHHHHcccTTccccccEEEEcccccccEEEEccHHHHcccccTTHHHHHHHHcHHHHTTcEEEEEcTTEEEEcTTccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccTTccHHHHHHHHHHTTccEEcTTccEEcccccccccTTTcccHHHHTccGGGGHHcccEEEETTTEEEEEcHHHHHHHHHHccTTGGGccccccEEGGGccccTTcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHHTccccccEEEccGGGHHHHHHHcccGGGcTTccHHHHHHHHHTTccccHHHHHHccHHHHHHHHcHHHHHHHHHHHTccTcccccccccccccEEEHHHEEEccccccccccTTHHHHHHHHHHHHHHHHHcccEcHHEEEEEEEcccccccccHccEEEEEEccHHccHHHHHHHHHHHHHTccccGGGcEEEEEGGGTEEEEccccHHHHcTTTHHHHTHHHHHHHHHHTcEEEccEEEHHHEEEcTTccEEEEEEEccTTccHHHHHTcEEEEcTTccEEEEccccEEEEEcTTccTTTcHHHHHHTTcccEEEccEEETTccEEcTTccccccTTccEEcTTccEEcTTcccccHHHccTTcEEEEEGGGcTTccTTTTcTTcEEEEEEEEcccccEEEcccHHHHHHHHTcEEEccccccccTTcEEEcGGGcTTTccccHHHHHHHHHHHGHHHHHHHE DISOP:02AL 1-2, 92-93, 602-616, 953-959| PSIPRED cccEEEEEEcEEEccccEEEEEccccEEEEEcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccccEEEEEccccccccccHHHHHHHHHHcccEEEEEccEEEEcccccHHHHccccEEEEEEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEcccccccccccccEEEEEEccccccccEEccccccccccccccccccccccccEEEEEEcHHHccccccccHHccEEEcccccccHHHHHHHHHHHHHccccccccHHHccHHHHHHHEEcccccEEEEEEcccccccccccEEHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccHHHcEEEEccEEHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHccEEEEEcccccccccEEEEEccHHHHHHcccHHHHHHHHccccccccccccccccccEEEEcccEEEEEccEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHcccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccEEcccccccEEEEEEEEccEEEEcccHHcccEEEEEEEEEEEccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHccccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHccEEEEEcccccccccEEEEEccHHHHHccccHHHHHHHHHHHHcccHHHHcc //