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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : uvrC
DDBJ      :uvrC         excinuclease ABC chain C
Swiss-Prot:UVRC_PELUB   RecName: Full=UvrABC system protein C;         Short=Protein uvrC;AltName: Full=Excinuclease ABC subunit C;

Homologs  Archaea  27/68 : Bacteria  884/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
a.2.9a.60.2b.40.3d.15.2d.198.1d.226.1
:611 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   11->104 1yd6D PDBj 2e-13 35.5 %
:BLT:PDB   378->605 2nrvA PDBj 3e-32 37.3 %
:RPS:PDB   36->179 1bqqT PDBj 4e-12 10.8 %
:RPS:PDB   195->240 1e52A PDBj 3e-06 26.1 %
:RPS:PDB   225->611 2bggA PDBj 1e-48 9.0 %
:RPS:SCOP  36->179 1bqqT  b.40.3.1 * 6e-13 10.8 %
:RPS:SCOP  212->305 1oeyJ  d.15.2.2 * 2e-16 6.7 %
:RPS:SCOP  420->538 1xkpB1  d.198.1.1 * 3e-22 13.1 %
:RPS:SCOP  528->611 2oceA1  a.60.2.6 * 1e-14 18.3 %
:HMM:SCOP  20->104 1mk0A_ d.226.1.1 * 3.1e-20 42.4 %
:HMM:SCOP  193->248 1e52A_ a.2.9.1 * 3.2e-11 32.1 %
:HMM:SCOP  522->610 1dgsA1 a.60.2.2 * 1.1e-23 41.6 %
:RPS:PFM   22->52 PF01541 * GIY-YIG 3e-04 45.2 %
:RPS:PFM   155->333 PF01496 * V_ATPase_I 1e-04 26.0 %
:RPS:PFM   397->543 PF08459 * UvrC_HhH_N 3e-36 54.7 %
:HMM:PFM   385->543 PF08459 * UvrC_HhH_N 1.9e-51 44.7 152/155  
:HMM:PFM   22->97 PF01541 * GIY-YIG 4e-13 36.8 76/80  
:HMM:PFM   211->240 PF02151 * UVR 1.3e-11 50.0 30/36  
:HMM:PFM   583->608 PF00633 * HHH 0.00032 30.8 26/30  
:HMM:PFM   229->280 PF11399 * DUF3192 7.7e-05 34.0 50/102  
:HMM:PFM   322->415 PF12485 * SLY 0.00056 25.3 91/154  
:HMM:PFM   259->364 PF00670 * AdoHcyase_NAD 0.001 24.8 101/162  
:BLT:SWISS 1->611 UVRC_PELUB 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20908.1 GT:GENE uvrC GT:PRODUCT excinuclease ABC chain C GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 98509..100344 GB:FROM 98509 GB:TO 100344 GB:DIRECTION + GB:GENE uvrC GB:PRODUCT excinuclease ABC chain C GB:PROTEIN_ID AAZ20908.1 GB:DB_XREF GI:71061905 GB:GENE:GENE uvrC LENGTH 611 SQ:AASEQ MKSSELGKDVIRKELPLIPKSPGVYRMLDHKDVILYVGKAKNLPNRLKSYVAEKNHIIRTARMLSQTFKLEITTTANESEALLLEANLIKKHKPKFNILLKDDKSFPFVFISNKDQWAQVTKHRGKKDKEGFYFGPFASAGTANWTIKMLQKIFQIRVCDDSTFKNRKRPCILYQIKRCSGPCVDYIDKEDYKKSVDQAIQFVSGKSRDIQKNLSKQMEEASEKLDFERASIFRDRIKSLNIIQSSQRINEANLIDADVIAAYKESGKTCIQVFFYRSKQNWGNQAYFPKHDPDQSLSEIMSSFLMQFYENKNVPKLIIINTEIEDKKLIEETLSKKENSAISINVAKKGTKAKVIAMAEKNAKESLNRKIYETNNNKNLFEGVAKKFDLKNGLNLVEVYDNSHISGTNSVGAMITFGNEGFVKKRYRKFDIKTKGNEQDDFAMLKEVLTRRFKRAMLEKGNYLTLPDLILIDGGKGQYSSAKEVLDEFGLHDLPMIAIAKGKLRNSGDETFFYKGKSFKFDKNDPTLFFMQRLRDEAHRFAITSHRAKRAKGITKSLLDQIDGIGSIRKRALLNHFGSARAVESASFDEIKSVEGVEEKVAKKIYNFFHE GT:EXON 1|1-611:0| SW:ID UVRC_PELUB SW:DE RecName: Full=UvrABC system protein C; Short=Protein uvrC;AltName: Full=Excinuclease ABC subunit C; SW:GN Name=uvrC; OrderedLocusNames=SAR11_0084; SW:KW Complete proteome; Cytoplasm; DNA damage; DNA excision; DNA repair;Excision nuclease; SOS response. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->611|UVRC_PELUB|0.0|100.0|611/611| GO:SWS:NREP 6 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006281|"GO:DNA repair"|DNA excision| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| GO:SWS GO:0004518|"GO:nuclease activity"|Excision nuclease| GO:SWS GO:0009432|"GO:SOS response"|SOS response| SEG 73->88|tttaneseallleanl| BL:PDB:NREP 2 BL:PDB:REP 11->104|1yd6D|2e-13|35.5|93/96| BL:PDB:REP 378->605|2nrvA|3e-32|37.3|209/218| RP:PDB:NREP 3 RP:PDB:REP 36->179|1bqqT|4e-12|10.8|130/184| RP:PDB:REP 195->240|1e52A|3e-06|26.1|46/56| RP:PDB:REP 225->611|2bggA|1e-48|9.0|365/395| RP:PFM:NREP 3 RP:PFM:REP 22->52|PF01541|3e-04|45.2|31/80|GIY-YIG| RP:PFM:REP 155->333|PF01496|1e-04|26.0|173/631|V_ATPase_I| RP:PFM:REP 397->543|PF08459|3e-36|54.7|139/156|UvrC_HhH_N| HM:PFM:NREP 7 HM:PFM:REP 385->543|PF08459|1.9e-51|44.7|152/155|UvrC_HhH_N| HM:PFM:REP 22->97|PF01541|4e-13|36.8|76/80|GIY-YIG| HM:PFM:REP 211->240|PF02151|1.3e-11|50.0|30/36|UVR| HM:PFM:REP 583->608|PF00633|0.00032|30.8|26/30|HHH| HM:PFM:REP 229->280|PF11399|7.7e-05|34.0|50/102|DUF3192| HM:PFM:REP 322->415|PF12485|0.00056|25.3|91/154|SLY| HM:PFM:REP 259->364|PF00670|0.001|24.8|101/162|AdoHcyase_NAD| GO:PFM:NREP 9 GO:PFM GO:0004518|"GO:nuclease activity"|PF01541|IPR000305| GO:PFM GO:0005622|"GO:intracellular"|PF01541|IPR000305| GO:PFM GO:0006281|"GO:DNA repair"|PF01541|IPR000305| GO:PFM GO:0015078|"GO:hydrogen ion transmembrane transporter activity"|PF01496|IPR002490| GO:PFM GO:0015986|"GO:ATP synthesis coupled proton transport"|PF01496|IPR002490| GO:PFM GO:0033177|"GO:proton-transporting two-sector ATPase complex, proton-transporting domain"|PF01496|IPR002490| GO:PFM GO:0003677|"GO:DNA binding"|PF08459|IPR001162| GO:PFM GO:0004518|"GO:nuclease activity"|PF08459|IPR001162| GO:PFM GO:0006289|"GO:nucleotide-excision repair"|PF08459|IPR001162| RP:SCP:NREP 4 RP:SCP:REP 36->179|1bqqT|6e-13|10.8|130/184|b.40.3.1| RP:SCP:REP 212->305|1oeyJ|2e-16|6.7|90/105|d.15.2.2| RP:SCP:REP 420->538|1xkpB1|3e-22|13.1|107/121|d.198.1.1| RP:SCP:REP 528->611|2oceA1|1e-14|18.3|82/90|a.60.2.6| HM:SCP:REP 20->104|1mk0A_|3.1e-20|42.4|85/97|d.226.1.1|1/1|GIY-YIG endonuclease| HM:SCP:REP 193->248|1e52A_|3.2e-11|32.1|56/56|a.2.9.1|1/1|C-terminal UvrC-binding domain of UvrB| HM:SCP:REP 522->610|1dgsA1|1.1e-23|41.6|89/181|a.60.2.2|1/1|RuvA domain 2-like| OP:NHOMO 962 OP:NHOMOORG 919 OP:PATTERN ------------------------11111111111---1111111111-1111-------------11 1121111111111111111-11111111111111111111211112121111111111111121111111211111111111111111111111112--1111111112111111111111111111111111121111111111211111111111111111111211111111111111111111111111111111111111111111111111111111112222221111111111111111111111211111111111111111111111111111111111111111111111111111111111111111111111222222222212111221111211111111122111111111111111212111111111111111111111111111111111-111111111111111111111111111111111111-111111111111111111111---------1122111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111--11111------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--11111111111111111111111111-111111111111111111111111111111111111111111111111111111211111111111111111-1111111111111111111111-1-11111111111111111111111111111111 ------------------------------------------------------------------------------------------------------------2-------------------------------------------------------------3--1-1-----1---1--1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 581 STR:RPRED 95.1 SQ:SECSTR #######cHHHHHHHHTcccccccEEEEcTTccEEEEEEEEccccccEEcccccccccccccEEEEcccEccEEEEccccccccEEEcccTTTTccccccccccEE##EEEEEEcccccEEccTTc######cEEEGGGccHH##HHTTTTTHHH#HGGGcccccccccccccccTTccHHHHHHHHH######ccTTccccccccHHHHHHHHHHHHHHHHHTEcGGGcEEEcccHHHHHHHHHHHcccccccccccEEEHHHHHHHHHHHHHHHTTccTTcEEEEEEc###ccccHHHHHHHHHHHHHHcccEEEEEEccccHH###HHHHHHHHHHTTccEEEEEGGccTTTHHHHHHHHHHHHHHHTTccccEEcccHHHHHHHcTTccccEEEEEEEEEccccEEEEEEEEEcTTccEEEEEEcccEEGGcGHHHHHHHHHHHHHHHHHHHHHHTcTcTTccccEEEEEEEccccccHHHHHHHHHHHHHHHHHTTcccTTcEEEEEEEEEcccEEccccEEEccccEEEEEEEccccEEEEEEEEEEEEEcccTTTHHHHHHHHHHHHHHHTTccTTHccccccccHHHHHHHHHHHHHHHHHHT DISOP:02AL 1-8, 53-58, 370-381, 547-560| PSIPRED cccccccHHHHHHHHHHccccccEEEEEcccccEEEEEEcHHHHHHHHHHHccccccHHHHHHHHHHHccEEEEEcccHHHHHHHHHHHHHHcccccEEEEcccccEEEEEEccccccEEEEEEEEcccccEEEcccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccccEEEEEEEEccEEEEEEEEEEccEEEcccccEEcccccccHHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccEEEEEEEEccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHccccccccccEEEEcccHHHHHHHHHHHHHcccccccEEEEEEcccccccccEEEEcccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHccHHHHHHcccccHHHHHHHHHHHcc //