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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : uvrD
DDBJ      :uvrD         DNA helicase II
Swiss-Prot:             

Homologs  Archaea  23/68 : Bacteria  905/915 : Eukaryota  96/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:678 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->641 3pjrA PDBj e-130 41.6 %
:RPS:PDB   7->450 3e1sA PDBj 3e-57 8.8 %
:RPS:PDB   452->643 1b77A PDBj 1e-24 11.0 %
:RPS:SCOP  10->638 1qhh.1  c.37.1.19 * 4e-87 43.7 %
:HMM:SCOP  5->642 1qhh.1 c.37.1.19 * 2.3e-159 37.0 %
:RPS:PFM   14->430 PF00580 * UvrD-helicase 2e-90 43.6 %
:HMM:PFM   10->494 PF00580 * UvrD-helicase 7e-135 39.3 483/533  
:BLT:SWISS 1->641 UVRD_RICBR e-149 44.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20839.1 GT:GENE uvrD GT:PRODUCT DNA helicase II GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 13829..15865 GB:FROM 13829 GB:TO 15865 GB:DIRECTION + GB:GENE uvrD GB:PRODUCT DNA helicase II GB:PROTEIN_ID AAZ20839.1 GB:DB_XREF GI:71061836 GB:GENE:GENE uvrD LENGTH 678 SQ:AASEQ MINSEYLNNLNNAQKEAVLYLDGPLLIVAGAGSGKTKVLTSRIAHIINEKKAFPNQILSVTFTNKAAKEMQNRVSSILNSEAIGLSWLGTFHSICAKLLRKHAPAAGLTSNFTIIDTDDQVRLIKNICKAENIDIKQLAPKFILSIIDRWKNKGFHPDEVVINKNDIFERTIRPLYKIYQQKLLDLNACDFGDLILHVVKILEKNHDIRNIYSNNFKYILVDEYQDTNYIQSRWLNLLSEKHKNLCCVGDDDQSIYSWRGAEIKNFLEFDQVYKNSKVIRLEENYRSSQNILSVASNLIANNQNRVGKTLKTTMEEGDLVKLNCFKNGKDEAIGVSDEIEKKLKKKYSFNNIAILVRAIFQTREFEERFLKIGLPYRILGGTKFYERAEIKDCVAYLRLIHQPKDDLAFDRIVNNPKRAIGESTIKLIHEFSKTNAVSLEIASKKLIEENLIKPKTKIGLSSFLFLMDKWRNDINIKKINHVKLLQLVLDESGYSSMLKNKKDLENENRLENIKELLSAMKDFDNLENFLEHVALATSVDQDWDGEKVNMMTMHGSKGLEFDVVFLPGWEEGLFPHQKSIEEKGQNGLEEERRLAYVGITRAKKKALISFAMNRFYQGNWIDSMASRFIEELPEKFLEKNSFFDDSKDNEEDFEFNQDFEIEEGTRSPGWIRYQKRIK GT:EXON 1|1-678:0| BL:SWS:NREP 1 BL:SWS:REP 1->641|UVRD_RICBR|e-149|44.4|635/653| SEG 648->663|dneedfefnqdfeiee| BL:PDB:NREP 1 BL:PDB:REP 2->641|3pjrA|e-130|41.6|634/646| RP:PDB:NREP 2 RP:PDB:REP 7->450|3e1sA|3e-57|8.8|442/517| RP:PDB:REP 452->643|1b77A|1e-24|11.0|172/228| RP:PFM:NREP 1 RP:PFM:REP 14->430|PF00580|2e-90|43.6|417/449|UvrD-helicase| HM:PFM:NREP 1 HM:PFM:REP 10->494|PF00580|7e-135|39.3|483/533|UvrD-helicase| GO:PFM:NREP 4 GO:PFM GO:0003677|"GO:DNA binding"|PF00580|IPR000212| GO:PFM GO:0004003|"GO:ATP-dependent DNA helicase activity"|PF00580|IPR000212| GO:PFM GO:0005524|"GO:ATP binding"|PF00580|IPR000212| GO:PFM GO:0006281|"GO:DNA repair"|PF00580|IPR000212| RP:SCP:NREP 1 RP:SCP:REP 10->638|1qhh.1|4e-87|43.7|607/623|c.37.1.19| HM:SCP:REP 5->642|1qhh.1|2.3e-159|37.0|616/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 2212 OP:NHOMOORG 1024 OP:PATTERN ------------------------111-2312412--1--211-3123-12-2--------1----2- 1121433333332333322-22223222222322222322255432223332323233334444323343543333332232111211122111111--11211122241211111111111112-1111111123233331112111132212233111111211211212111222121122112222144222222222232223233222222212122332222222223222222222232222222221211212221122222222222222222222222222322232222222222222222223222323233344555334444333442444244435521222222226222222132222111111111222222112222211111111111-12114121131123312222222212231111121221122222222321312111111111121122211121122221111111112233233322222222222243222223234334511643223222533354243222222222222231232223322222622222222432333334333213223222222222222222222222322252443243323333233322232322321-2222221122243433333333333453-33333333333333333343343333343333333333533333333333331333333333333--2222222233332433422222222222222322232323222232243322343233343222233222355533333344433332323222222221235533552221211232311111-11111111112112211112222211111212 1-11--2-311----111111111-11-------------------11-111111111-1--112222-12121122-2221111211-11111111111111211-153---------------------------------3--------------2----1---------11233181-11--113115-21---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 642 STR:RPRED 94.7 SQ:SECSTR #cTTTTHHTTcccHHHHHHHHHcHHHHHHHHHTccccEEHHHHHHHHHHHHcccHHHHHHHHHHHHHHTccEEEcccccccccccHcEEEcHHHHHHHHHHHHHHHHHHHccccccccccccccTTTTTTccHHHHHHHHHHTTccEEEEEcHHHHHHHHHHHHHHTTccEEEEEccHHHHHHHHHHHTccEEEHHHHTTEETTEEcccccccccccEEEEccGGGccHHHHHHHHTTccTTcEEEEEEcTTcccccccccHHHHHHHHccEEEcccccHHHHTcHHHHHHHHHHTTcccccccTTEEEEEcccTTcHHHHHHHHHHTTcGGGcEEEEcccccTTcHHHHHHHHHHHccccccEEccccEEcTTcEEEEccccTTTTccTTcEEEEEEEccccEEEEETTEEEEEcGGGGTTEEEccEEEHHHHTTccEEEEEEEEcGGGEEcccTTccHHHHHHHTTTccEEEEcHHHHHHHHHHTcccTTccHHHHHHHEEccccEEEccHHHHHHHHTTccTTcEEEEcTTccEEEEcEEEccccGGGccccccccccccccEETccTEEEEETTTcHTcHHHHHHHHHHHHHTTccEEEEEEEETTEEEEEEEcTTTcTTcccccEEEEEEEccccccE################################### DISOP:02AL 1-3, 539-542, 584-585, 640-664, 666-667, 676-678| PSIPRED cccHHHHccccHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHccccccccEEEEHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHccccEEEEEccccccHHHHHHHHHHHccccEEEEEEcccccccccccccHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHHHcccccEEcccccccEEEEEcccHHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEHHHccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHccHHHcEEEEEEEcccccccccccccccccHHHccHHHHHHHcccccccccccccccccccccccccccHHHHHHHHccc //