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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : yadH
DDBJ      :yadH         permease
Swiss-Prot:             

Homologs  Archaea  31/68 : Bacteria  431/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
:255 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   10->214 PF01061 * ABC2_membrane 4e-15 32.0 %
:HMM:PFM   8->217 PF01061 * ABC2_membrane 2.2e-36 29.1 203/208  
:BLT:SWISS 1->255 YADH_SHIFL 2e-46 34.1 %
:TM
:REPEAT 2|59->133|134->206

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21631.1 GT:GENE yadH GT:PRODUCT permease GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 788998..789765 GB:FROM 788998 GB:TO 789765 GB:DIRECTION + GB:GENE yadH GB:PRODUCT permease GB:NOTE ABC-2-type transport system GB:PROTEIN_ID AAZ21631.1 GB:DB_XREF GI:71062628 GB:GENE:GENE yadH LENGTH 255 SQ:AASEQ MKFNYYGFKAIYVHEMNRFIRTIGQSLLSPVISTSLYFVVFGSVIGNYIQKIDGVSYGSYIVPGLLMLTLLTQSISNTSFGIFFPKFNGTINEILAAPISTLETVLAFVGAGATKTLVVGAVIYATASFFADVSVMHPMLMIFLLVLVSFTFALFGFLIGVVSKNFEQMSIIPSLVITPMVFLGGSLYSLDMLPPFWQTISYFNPVVYLIDGLRFSFYGVSDFDIWISISSMVFFLIVCITLVSILLKKGYNIKS GT:EXON 1|1-255:0| BL:SWS:NREP 1 BL:SWS:REP 1->255|YADH_SHIFL|2e-46|34.1|255/256| TM:NTM 8 TM:REGION 23->45| TM:REGION 55->77| TM:REGION 84->106| TM:REGION 112->134| TM:REGION 138->160| TM:REGION 168->190| TM:REGION 192->214| TM:REGION 226->247| NREPEAT 1 REPEAT 2|59->133|134->206| RP:PFM:NREP 1 RP:PFM:REP 10->214|PF01061|4e-15|32.0|200/208|ABC2_membrane| HM:PFM:NREP 1 HM:PFM:REP 8->217|PF01061|2.2e-36|29.1|203/208|ABC2_membrane| GO:PFM:NREP 1 GO:PFM GO:0016020|"GO:membrane"|PF01061|IPR013525| OP:NHOMO 625 OP:NHOMOORG 467 OP:PATTERN ---1------------1------11--11--1--11--1111147-24326641111-111---2--- 11111----------1---------------------------------11--11--1--11---1----1-------1---2-1------------------------1---------------11---------111--221--1--------11------2---312------------------11-----------------------------------111111-2--------------------1-----------------------------111-------------1------------------------21--------------11------1------2111-2--212--------3-2222------221111111111------------11211211122-111122221233211122121-11122-------------121-----------------------------221121222223222232222222332222223232121-222222111121111231111111-------11122131-11----------211-1111211111--2-------------------------11121122311111111111111111111111---1111------11111111111111111-11111111111111111111111111211111111111111111111111111111111111111--11111111111121211111-11----11111111111111211111111121111211112111111211111111111111111222222221111112-222222-----------------------------------------11111--1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1-------1-----------1--1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 254-255| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccc //