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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : yajF
DDBJ      :yajF         probable NAGC-like transcription regulator
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  287/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.55.1
:300 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->294 2ap1A PDBj 3e-24 30.8 %
:RPS:PDB   3->296 2ap1A PDBj 6e-35 25.9 %
:RPS:SCOP  3->297 1sz2A1  c.55.1.7 * 4e-24 14.0 %
:HMM:SCOP  1->297 1sz2A1 c.55.1.7 * 1e-42 30.9 %
:RPS:PFM   4->157 PF00480 * ROK 2e-20 35.3 %
:HMM:PFM   4->186 PF00480 * ROK 9.1e-38 32.4 176/179  
:BLT:SWISS 1->294 MAK_ECOLI 7e-48 38.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21586.1 GT:GENE yajF GT:PRODUCT probable NAGC-like transcription regulator GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 744621..745523 GB:FROM 744621 GB:TO 745523 GB:DIRECTION + GB:GENE yajF GB:PRODUCT probable NAGC-like transcription regulator GB:PROTEIN_ID AAZ21586.1 GB:DB_XREF GI:71062583 GB:GENE:GENE yajF LENGTH 300 SQ:AASEQ MQIGFDVGATKIESVILKDNGEEVDRSRRDCPKDYLSIVQTIKDVVVELEKKHNKTLPVGVCHPGVHSPQTGLVKNAPNCVWIEKQPFQKSLREALNREVFCENDGNCFALSEAIDGAGKHYKIVYGIILGSGAGGGLVIDKQIVSGPNGVAGEWGHNQLPFMAAQKEELKTLNLRDAEVESFVSGLGLAKRFNKKYKKNLKANEIFELYRRHELDAEKMIEEFKTNLAMSLATIVNILDPDVFIFGGGVTNEIDFFDEIENLTKKYVIGKEYEGVFLKPKYGDASGVRGAARLGRKSSY GT:EXON 1|1-300:0| BL:SWS:NREP 1 BL:SWS:REP 1->294|MAK_ECOLI|7e-48|38.6|293/302| SEG 127->138|giilgsgagggl| SEG 191->204|krfnkkykknlkan| BL:PDB:NREP 1 BL:PDB:REP 1->294|2ap1A|3e-24|30.8|292/305| RP:PDB:NREP 1 RP:PDB:REP 3->296|2ap1A|6e-35|25.9|293/305| RP:PFM:NREP 1 RP:PFM:REP 4->157|PF00480|2e-20|35.3|153/181|ROK| HM:PFM:NREP 1 HM:PFM:REP 4->186|PF00480|9.1e-38|32.4|176/179|ROK| RP:SCP:NREP 1 RP:SCP:REP 3->297|1sz2A1|4e-24|14.0|285/319|c.55.1.7| HM:SCP:REP 1->297|1sz2A1|1e-42|30.9|285/0|c.55.1.7|1/1|Actin-like ATPase domain| OP:NHOMO 435 OP:NHOMOORG 292 OP:PATTERN ----------------1--------------------------------------------11---11 -2----1-------------------------------11-----------------------1-----1--------------1111--1---------1-----12------------------1-12--1-11------------1---------------11-11--------------1-1---1-1-1------1--------11--1----121---1111--1-1-11111111111111------1------1-1--------1----12------11--------------------------------1--1-1--4-------1-------111------------------1-113-11-1--2111------1-----------------------11111111--1-211311211111----1-----1----1111111111111111-----------------------------1--------------------------------------------1-----------11----1------------1-----------------1-1--------1--1---------------------------233-1-----23222211122211111113------1------23322212223233322-222233323223211211233322--1333333333333333331122222--322222212222-------------1----111111-11111222-----------1-----------------11-1-11-111112222221111111--------------1-11--11---------------------1-------------------1-112--1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 300 STR:RPRED 100.0 SQ:SECSTR EEEEEEEcccEEEEEEEETTccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHTcccEEEEEEccccccTTcccccTTcTTTTTTccHHHHHHHHHTccEEEEEHHHHHHHHHHTcTTGGGccEEEEEEEcccEEEEEEETTEEEccTTccTTcGGGccccHHHHHHHcTTccccccccTHHHHcHHHHHHHHHHHHcccccHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcGGGGcTHHHHccGGGcGGGccTTccccEEEEcccTTTHHHHHHHHTTcccHH DISOP:02AL 300-301| PSIPRED cEEEEEEcccEEEEEEEcccccEEEEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEEccccEEcccEEEEEcccccccccccHHHHHHHHHcccEEEEEcHHHHHHHHHHccccccccEEEEEEEccccEEEEEEccEEEcccccccccccEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccHHHccHHHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHHHHHHcc //