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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : yajQ
DDBJ      :yajQ         hypothetical protein
Swiss-Prot:Y692_PELUB   RecName: Full=UPF0234 protein SAR11_0692;

Homologs  Archaea  0/68 : Bacteria  451/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
d.58.49
:161 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   2->161 1in0A PDBj 1e-19 30.6 %
:RPS:SCOP  2->87 1in0A1  d.58.49.1 * 6e-21 31.4 %
:RPS:SCOP  89->161 1in0A2  d.58.49.1 * 2e-12 30.1 %
:HMM:SCOP  2->87 1in0A1 d.58.49.1 * 1.7e-24 44.2 %
:HMM:SCOP  88->161 1in0A2 d.58.49.1 * 2e-23 52.7 %
:RPS:PFM   1->160 PF04461 * DUF520 1e-23 38.1 %
:HMM:PFM   1->160 PF04461 * DUF520 4.8e-58 46.9 160/160  
:BLT:SWISS 1->161 Y692_PELUB 1e-74 100.0 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21511.1 GT:GENE yajQ GT:PRODUCT hypothetical protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(676379..676864) GB:FROM 676379 GB:TO 676864 GB:DIRECTION - GB:GENE yajQ GB:PRODUCT hypothetical protein GB:NOTE Protein of unknown function (DUF520) GB:PROTEIN_ID AAZ21511.1 GB:DB_XREF GI:71062508 GB:GENE:GENE yajQ LENGTH 161 SQ:AASEQ MPSFDVISKVSYPEFDNALANCLREIGNRFDFKGLHISIERKDKIITTLAPDELKLKQVNELLQVHLIRRKVDPRVLSIKNSENAAGSSIRQVSELQEGISQENAKKIITEIKKLKLKIQIKIQGEELRAEGKKRDDLQEAMSAITAIDIGLPVEFVNFRD GT:EXON 1|1-161:0| SW:ID Y692_PELUB SW:DE RecName: Full=UPF0234 protein SAR11_0692; SW:GN OrderedLocusNames=SAR11_0692; SW:KW Complete proteome. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->161|Y692_PELUB|1e-74|100.0|161/161| COIL:NAA 23 COIL:NSEG 2 COIL:REGION 91->107| COIL:REGION 113->118| SEG 106->124|kkiiteikklklkiqikiq| BL:PDB:NREP 1 BL:PDB:REP 2->161|1in0A|1e-19|30.6|160/162| RP:PFM:NREP 1 RP:PFM:REP 1->160|PF04461|1e-23|38.1|160/160|DUF520| HM:PFM:NREP 1 HM:PFM:REP 1->160|PF04461|4.8e-58|46.9|160/160|DUF520| RP:SCP:NREP 2 RP:SCP:REP 2->87|1in0A1|6e-21|31.4|86/88|d.58.49.1| RP:SCP:REP 89->161|1in0A2|2e-12|30.1|73/74|d.58.49.1| HM:SCP:REP 2->87|1in0A1|1.7e-24|44.2|86/0|d.58.49.1|1/1|YajQ-like| HM:SCP:REP 88->161|1in0A2|2e-23|52.7|74/0|d.58.49.1|1/1|YajQ-like| OP:NHOMO 454 OP:NHOMOORG 453 OP:PATTERN -------------------------------------------------------------------- 11111---------11111-11--1111111111111111-11111111111111111--111-1111111-------1111-----------------------11--1------------------------1-111111111-1--1---11111111111-111111111111111111-------1111111111111111111-11111111111--11------11--------------------1----------------------------------------------------------------------11----------------------------1-1111----1--------1----------------------------------------------1-----------------------------------------11------------------------------1-----1111111111111111111111111111111111111111111111111111111111-------1111111-----11--1111-11111111111111---1111-111111---------11--1111111111-1111111111111111111111---1--1------11111111111111111-111111111111111111111111111111111111111111111111111--111111111111--11111111111-11111111111111111111111111---1111111111111111111---------1111111111111111111111111------11111111------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 160 STR:RPRED 99.4 SQ:SECSTR #cEEEEEccccHHHHHHHHHHHHHHHTTcGGGTTccEEEETTTTEEEEEEccHHHHHHHHHHHHHHHHHTTccGGGEEcccccEEETTEEEEEEEEcccccHHHHHHHHHHHHHHTccEEEEEETTEEEEEEccHHHHHHHHHHHHHcccccccEEEEEEc PSIPRED cccccEEEcccHHHHHHHHHHHHHHHHcccccccccEEEEEcccEEEEEEccHHHHHHHHHHHHHHHHHccccHHHccccccccccccEEEEEEEEEccccHHHHHHHHHHHHHcccccEEEccccEEEEEcccHHHHHHHHHHHHccccccccEEEcccc //