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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ycaD
DDBJ      :ycaD         transporter
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  216/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
f.38.1
:440 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  36->150,209->413 1pv6A  f.38.1.2 * 9e-05 12.5 %
:HMM:SCOP  1->394 1pw4A_ f.38.1.1 * 1.4e-44 22.1 %
:RPS:PFM   44->149 PF05977 * DUF894 2e-05 25.0 %
:HMM:PFM   11->231 PF07690 * MFS_1 1.9e-17 23.3 219/353  
:HMM:PFM   205->393 PF07690 * MFS_1 5e-21 21.8 179/353  
:HMM:PFM   421->438 PF00462 * Glutaredoxin 0.00042 50.0 18/60  
:BLT:SWISS 12->369 YFKF_BACSU 7e-20 24.9 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21514.1 GT:GENE ycaD GT:PRODUCT transporter GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(678384..679706) GB:FROM 678384 GB:TO 679706 GB:DIRECTION - GB:GENE ycaD GB:PRODUCT transporter GB:NOTE similar to mfs superfamily GB:PROTEIN_ID AAZ21514.1 GB:DB_XREF GI:71062511 GB:GENE:GENE ycaD LENGTH 440 SQ:AASEQ MNKVLKNSWALFLGIGFLMMAYGFQGSLLGVRAVQEQFSLTATGFMMSGYFVGYFIGAMTISNLISKVGHIRVFAAFASLASLVILVHSIFINPYVWFILRVLTGISMVCIYTVAESWLNDRSSNKNRGSILSIYMVILYGSMGIGMFLLNFSRPENYQPFILVSIITSLALIPILLTKKKPPTFKKIQGMPLKELYETSPFGMVSALFYGTIQSALFTLLAVYAASMNFTIFQISLVTFLLAISGAISQYPIGKLSDKYDRRKVIIISTFGASLFALLAILSSGQMYLPGELATSKVWFFIFLILFSICSLPMFSLICAHTNDYIPKEKFVAAGAGIQFTFGLGAMSGPFLCSIFMNIVGSNGFFVFLLFFHALIGVFGIYRMRVRETVENPDSQFVAMPSTITPAGIELNPTTEHIDEPYSDKVKEILDRKGVEYKKN GT:EXON 1|1-440:0| BL:SWS:NREP 1 BL:SWS:REP 12->369|YFKF_BACSU|7e-20|24.9|341/391| TM:NTM 12 TM:REGION 9->31| TM:REGION 45->67| TM:REGION 70->92| TM:REGION 96->118| TM:REGION 131->152| TM:REGION 159->178| TM:REGION 201->223| TM:REGION 228->250| TM:REGION 265->285| TM:REGION 299->321| TM:REGION 332->354| TM:REGION 362->383| SEG 172->188|lipilltkkkpptfkki| SEG 273->284|aslfallailss| SEG 300->312|ffiflilfsicsl| RP:PFM:NREP 1 RP:PFM:REP 44->149|PF05977|2e-05|25.0|104/402|DUF894| HM:PFM:NREP 3 HM:PFM:REP 11->231|PF07690|1.9e-17|23.3|219/353|MFS_1| HM:PFM:REP 205->393|PF07690|5e-21|21.8|179/353|MFS_1| HM:PFM:REP 421->438|PF00462|0.00042|50.0|18/60|Glutaredoxin| RP:SCP:NREP 1 RP:SCP:REP 36->150,209->413|1pv6A|9e-05|12.5|309/417|f.38.1.2| HM:SCP:REP 1->394|1pw4A_|1.4e-44|22.1|384/447|f.38.1.1|1/1|MFS general substrate transporter| OP:NHOMO 301 OP:NHOMOORG 217 OP:PATTERN -------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11------1-1----1--11111------1---111111----------------------------------------------------------------------------------------------------------------------------------------------------1-1--1-----1-------22332333333------1--141-23332141125522-113211111234111111111------1-----------------------------1---2-11111--------------1-----------------------------1-----------------------1------------------------------111-111111----------1-----21--1-211-2122221112222121-211---11-1------1-1--22--------1-----1---1----------1------1111111111111111112---1111--111111111111----11-11------1211--1---------------------1-22222121232231111111111111----1111111--11--11111111--------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 178-194, 388-390, 435-440| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHcHHHHHHHHHHHHcccccccc //