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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ycjP
DDBJ      :ycjP         putative ABC transport protein
Swiss-Prot:             

Homologs  Archaea  28/68 : Bacteria  488/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:282 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   76->242 2r6gG PDBj 2e-08 32.2 %
:RPS:PDB   172->205 3dhwA PDBj 8e-10 35.3 %
:RPS:SCOP  18->282 2r6gG1  f.58.1.1 * 4e-17 16.6 %
:HMM:PFM   90->274 PF00528 * BPD_transp_1 3.3e-20 22.3 175/185  
:BLT:SWISS 10->282 YURM_BACSU 4e-21 22.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21090.1 GT:GENE ycjP GT:PRODUCT putative ABC transport protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(270578..271426) GB:FROM 270578 GB:TO 271426 GB:DIRECTION - GB:GENE ycjP GB:PRODUCT putative ABC transport protein GB:NOTE inner membrane component GB:PROTEIN_ID AAZ21090.1 GB:DB_XREF GI:71062087 GB:GENE:GENE ycjP LENGTH 282 SQ:AASEQ MGKLYTFLKYFFITIWTVFVVAPFLWALTTSFKDFNSVNGGVTYIPWVDFEPNLEGWRVLIKSPAQGGVDIVEPYFNSLFVTCTASLISIILGTLSAYALSRYTFKAGPIKNNDITFFFISQRIMPPIVLSIPFFLFLGAVNLLDSLIGLIVVYIVLLMPIAVWIMVDFFNKVPREIDETALIDGCNPYQAFFKVVLPNSIPGLIVAGMFCIIFGWIDFFFAFILTFTEVQLLPVKIVALNSSITPWWSLSASALVSVAPLIIVAFIVERYLSKGNLSGAIK GT:EXON 1|1-282:0| BL:SWS:NREP 1 BL:SWS:REP 10->282|YURM_BACSU|4e-21|22.4|259/300| TM:NTM 6 TM:REGION 8->30| TM:REGION 77->99| TM:REGION 116->138| TM:REGION 148->170| TM:REGION 191->213| TM:REGION 252->274| SEG 147->158|liglivvyivll| SEG 246->261|pwwslsasalvsvapl| BL:PDB:NREP 1 BL:PDB:REP 76->242|2r6gG|2e-08|32.2|146/284| RP:PDB:NREP 1 RP:PDB:REP 172->205|3dhwA|8e-10|35.3|34/203| HM:PFM:NREP 1 HM:PFM:REP 90->274|PF00528|3.3e-20|22.3|175/185|BPD_transp_1| RP:SCP:NREP 1 RP:SCP:REP 18->282|2r6gG1|4e-17|16.6|259/284|f.58.1.1| OP:NHOMO 2171 OP:NHOMOORG 519 OP:PATTERN 33--41--2323233-3112---16--31-------------------------23531-1422---- ---1Q2-2333-1112244-4222354444422555145641-2GYH23742LGI117--2365839GME244445661---5-------------------------1---------------------------77732---5511-311---11--1-1-1121433--1----------992329B-632222222331122222LE884721343A17225565558z111111111111111-1---31------1-111---------3-242324344311444554544444333344443333244---4443B3-17222323323262---333K-122228--231--1J---775C211------------2-C981--434423355355455F---4--3-17K--NNNDPNNebRRN11---6F76547A63--------2112--12-----------------------------2---2--22223554532233322684443234351112--1125-1112-756C11--1--11-------------1-2--111--111-----------222222----------1------------------122-----1-3----------------------1----------434-2-1111111111-111111121111-11111123222----1--------------5---111---133333333333---------11-1--658---211--------1----------1-11111122321232545-------------------1-3221111111111-------1---------------16----------1--------------5FA786N498-1- -------------2------------------------------------------------------------------------------------------------------------------------------------------------2-----------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 167 STR:RPRED 59.2 SQ:SECSTR ###########################################################################HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHTTcHHHHHHHHHTTHHccccccHHHHcTTccTTcTTTTcHHHHHHHHTTTTHHHHHHHHHHHTHccTTTTTHHHHHTccTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHTccHHHHHHcccGGG######################################## PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc //