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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : yebA
DDBJ      :yebA         M23/M37 peptidase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  712/915 : Eukaryota  7/199 : Viruses  11/175   --->[See Alignment]
b.71.1b.84.3
:432 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   73->402 2gu1A PDBj 4e-33 30.0 %
:RPS:PDB   33->153 2e4tA PDBj 2e-05 8.3 %
:RPS:PDB   277->394 2b13A PDBj 3e-28 31.9 %
:RPS:SCOP  301->405 2fhbA4  b.71.1.1 * 7e-36 12.5 %
:HMM:SCOP  143->399 1qwyA_ b.84.3.2 * 4.2e-61 37.5 %
:RPS:PFM   301->392 PF01551 * Peptidase_M23 3e-23 52.2 %
:HMM:PFM   300->395 PF01551 * Peptidase_M23 4.2e-33 48.9 94/96  
:HMM:PFM   75->121 PF01476 * LysM 0.00059 23.3 43/44  
:BLT:SWISS 60->415 YEBA_SHIFL 1e-36 31.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21343.1 GT:GENE yebA GT:PRODUCT M23/M37 peptidase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(509729..511027) GB:FROM 509729 GB:TO 511027 GB:DIRECTION - GB:GENE yebA GB:PRODUCT M23/M37 peptidase GB:PROTEIN_ID AAZ21343.1 GB:DB_XREF GI:71062340 GB:GENE:GENE yebA LENGTH 432 SQ:AASEQ MIFSSNKIIKIIKKNIEITFLFLLLLITISSTNIYNEKKVLIDENYKNLINNIYFQKSINEIFDNLVPRYKNIDHKISSGETFDKILNNYSIPNEEINQIKKKLNSDYNINNLQPNLEIKITIDQSNNKKITSFLFPVSRTEKIQLIRNLDNNLFEKKTIITNLNKKIIFKEGKITQSLYKTAIDLKVQPNVIIEFARIYGFQVDFQRDIRKNDNFQIMYEVFEDDEGKVFETSNIIFADLKLSGKNNALYYFEKKGSEGHYDENGKSVEKALMKTPINGARLSSAFGMRKHPIDGFNKMHRGTDFAAPMGTPIMASGSGLITRARWCGGGGNCIKIKHNSTYETIYAHMKNFARGIKEGIRVKQGQIIGYVGSTGKSTGPHLHYEVVVNGKKVNSQKLKLPSGKTLKGKEREIFEVEKIKLDVLKSELIIG GT:EXON 1|1-432:0| BL:SWS:NREP 1 BL:SWS:REP 60->415|YEBA_SHIFL|1e-36|31.0|342/440| SEG 6->16|nkiikiikkni| SEG 18->32|itflfllllitisst| SEG 157->169|kktiitnlnkkii| BL:PDB:NREP 1 BL:PDB:REP 73->402|2gu1A|4e-33|30.0|317/324| RP:PDB:NREP 2 RP:PDB:REP 33->153|2e4tA|2e-05|8.3|121/509| RP:PDB:REP 277->394|2b13A|3e-28|31.9|116/131| RP:PFM:NREP 1 RP:PFM:REP 301->392|PF01551|3e-23|52.2|90/96|Peptidase_M23| HM:PFM:NREP 2 HM:PFM:REP 300->395|PF01551|4.2e-33|48.9|94/96|Peptidase_M23| HM:PFM:REP 75->121|PF01476|0.00059|23.3|43/44|LysM| RP:SCP:NREP 1 RP:SCP:REP 301->405|2fhbA4|7e-36|12.5|104/118|b.71.1.1| HM:SCP:REP 143->399|1qwyA_|4.2e-61|37.5|253/270|b.84.3.2|1/1|Duplicated hybrid motif| OP:NHOMO 1994 OP:NHOMOORG 730 OP:PATTERN -------------------------------------------------------------------- 113-131322211111111-1411111111112122669A1--1-2212351544112--423-222675-------------3-411654515112--3223341112----------------1213133312223321---22J534454433312233234556664-3-----3----4223222211-444444433535553432221444111514521111-731333433234443342-1212----------------------12-111-----------------------------------------343--22222221214-11-343215-1811647645444435666431-33-444311111113333333333333333333333-333433332441322222222222323433111111111-------------33411----------22222222212211-11254442233332222221-1111112111111221223222111223332322232211222112222222122233324224343534445353243534555583211223333332334333333333321--442322232223333344453443433533--1323311----23222123323333433-343323233433333333132323111222222222222222223323333212222222222221113111112222-24231111111111-111133343321-14444444344544446444---------2545554454766445565755555453521339988774444445455--------------------------2111121212--- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------11------6--1--1--1---- -1---------------------------------------------------------------------------1----1---------------------11---1--1-------------1-------111-------------------------------------- STR:NPRED 396 STR:RPRED 91.7 SQ:SECSTR ################################cEEEEcccTTcHHHHHHHHHHHcTTccccccccEEEEEEEccTTTEEEEEEEETTEEEEEEEEEEEccccccEEEEEEEEcccccccEEEEEEETTEEEEEEEcHHHHHHHccccccTTcccGGGGTcccccccEEEcccEEcTTcEEEEEEEccccTTccEEcTTccEEccEEEEEEEccTTcEEccGHTcGGccHHHHHHHcccccEEcccTTEHHTTcTTEEEEEEEEHHHHcEEEEEEccccccHHHHTccEEEccEEcTTccEEccEEEEccTTcEEEccccEEEEEEEEcccccEEEEEEETccEEEEEEEEccccccccTTcEEcTTcEEEEccccccccccEEEEEEEEccccGcccEEEccccccHHHHcccTTEEEcTTccccccc#### DISOP:02AL 1-3, 257-272, 402-416| PSIPRED ccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHccccccHHHccccHHHHHHHHcccccccEEEEEccccHHHHHHHHccccHHHHHHHHHHccccccHHHcccccEEEEEEEcccccEEEEEEEEEccccEEEEEEEccccEEEEEEEEcccEEEEEEEEEEEcHHHHHHHHHccccHHHHHHHHHHHHccccccHHcccccEEEEEEEEEccccccEEEcccEEEEEEEEcccEEEEEEEEcccccccccccccccccccccccccccEEEEcccccccccccccccccEEEcccccccEEEEccccEEEEEEEcccccEEEEEEEcccEEEEEEEccccccccccccEEccccEEEEEEccccccccEEEEEEEEccEEEccHHccccccccccHHHHHHHHHHHHHHHHHHHHHccc //