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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : yedY
DDBJ      :yedY         Oxidoreductase
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  326/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.176.1
:301 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   39->297 1xdyB PDBj 2e-82 54.7 %
:RPS:PDB   49->270 2biiA PDBj 3e-48 22.4 %
:RPS:SCOP  39->296 1xdqA  d.176.1.1 * 9e-72 54.5 %
:HMM:SCOP  50->297 1xdyA_ d.176.1.1 * 1.2e-86 44.8 %
:RPS:PFM   85->236 PF00174 * Oxidored_molyb 3e-19 36.4 %
:HMM:PFM   82->238 PF00174 * Oxidored_molyb 9e-41 31.1 148/169  
:HMM:PFM   21->56 PF06969 * HemN_C 0.00032 27.3 33/118  
:BLT:SWISS 7->301 Y844_METCA 3e-95 58.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21577.1 GT:GENE yedY GT:PRODUCT Oxidoreductase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(737902..738807) GB:FROM 737902 GB:TO 738807 GB:DIRECTION - GB:GENE yedY GB:PRODUCT Oxidoreductase GB:NOTE molybdopterin binding GB:PROTEIN_ID AAZ21577.1 GB:DB_XREF GI:71062574 GB:GENE:GENE yedY LENGTH 301 SQ:AASEQ MKKYKHSEITPELIYNKRRKFIKSIGLGVGSISLSSIPFLNNAYSQNKTKLTSYEDITTYNNYYEFGTSKSDPYRNSQEFITKPWSVTIEGEVENPVTISAEEIISLFPSEERIYKLRCVEGWSMVIPWMGFSLSRLLSKVSIKNTAKFVEFESVYDPEQMNGQRYPVLNWPYREGLRIDEAMHPITTVVTGLYGKTLPNQNGAPLRIFVPWKYGFKSAKAIVKIKLVENMPTSSWMRSSPREYGFYSNVNPNVSHPRWSQATERVIGEGILAPRIETEMFNGYGDEVAHLYSGMDLKKNF GT:EXON 1|1-301:0| BL:SWS:NREP 1 BL:SWS:REP 7->301|Y844_METCA|3e-95|58.2|292/310| SEG 24->37|siglgvgsislssi| BL:PDB:NREP 1 BL:PDB:REP 39->297|1xdyB|2e-82|54.7|256/262| RP:PDB:NREP 1 RP:PDB:REP 49->270|2biiA|3e-48|22.4|205/415| RP:PFM:NREP 1 RP:PFM:REP 85->236|PF00174|3e-19|36.4|140/156|Oxidored_molyb| HM:PFM:NREP 2 HM:PFM:REP 82->238|PF00174|9e-41|31.1|148/169|Oxidored_molyb| HM:PFM:REP 21->56|PF06969|0.00032|27.3|33/118|HemN_C| GO:PFM:NREP 1 GO:PFM GO:0009055|"GO:electron carrier activity"|PF00174|IPR000572| RP:SCP:NREP 1 RP:SCP:REP 39->296|1xdqA|9e-72|54.5|255/262|d.176.1.1| HM:SCP:REP 50->297|1xdyA_|1.2e-86|44.8|248/0|d.176.1.1|1/1|Oxidoreductase molybdopterin-binding domain| OP:NHOMO 427 OP:NHOMOORG 339 OP:PATTERN 111----1------11-111-----------------------------11-----------11---- 223-1----------11------------------------1-1------------------1-------------------11--1--------------------1----------------------------11111---1-1112111-1--------1--11111------------111-----1----------------------------------------2--------------------------------------------------------------------------------------------------------------------------------------------1-11111-----121111--1111122222222222-11211211-1--11111212221112--11111111111--------33311111-----------------------------11121-111122222322222211322222222231111111121111121312-12-1-1112-----------13------------------1-1---321332--1----111111----------1-----11-1111-1-11211111111111111111----1-1------11212111111111111-11-111111111111111111111---11111111111111113-11---1--111111111111-------------1-1-11111--1-----111----------1-22221121111111222-------------1------------11111111------1-------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 262 STR:RPRED 87.0 SQ:SECSTR ######################################ccccGGEEccccHHHHHHTcccccGGGccEEEccccccccGGGGGGcEEEEEEcccccEEEEHHHHHHHcccEEEEEEEEcTcccEEEEEEEEEEHHHHHHHHcccTTccEEEEEEccccTEccccccETTTcccEEEEEHHHHTcTTcEEEEEETTEEccGGGTTTcEEEcTTccGGGccccEEEEEEEccccccHHHHcccccHHcccccccTTccHHHHHHcGGGGccGccEEEEEEEEEccTTccEEEEEEEccEEcc# DISOP:02AL 1-4| PSIPRED ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHcccccccEEEcccccccccccccccccccEEEEEEEEcccEEEcHHHHHHHcccEEEEEEEEEEccccEEEEEEcccHHHHHHHccccccccEEEEEEEccccccccccccccccccEEcccHHHHHcccEEEEEEEccEEccHHcccEEEEEEcccccccccEEEEEEEEEEcccccHHEEccccccccccccccccccccccccccEEcccccccccccccccccHHHHHHHHHccccEEccc //