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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ygeX
DDBJ      :ygeX         Pyridoxal-phosphate dependent enzyme
Swiss-Prot:             

Homologs  Archaea  6/68 : Bacteria  251/915 : Eukaryota  55/199 : Viruses  0/175   --->[See Alignment]
c.79.1
:380 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   53->357 1tdjA PDBj 1e-14 30.6 %
:RPS:PDB   37->380 2c2bA PDBj 7e-36 12.4 %
:RPS:SCOP  34->377 1tdjA1  c.79.1.1 * 3e-44 19.7 %
:HMM:SCOP  46->378 1p5jA_ c.79.1.1 * 1.1e-67 30.9 %
:RPS:PFM   52->333 PF00291 * PALP 8e-20 33.5 %
:HMM:PFM   48->337 PF00291 * PALP 9e-57 30.2 265/297  
:BLT:SWISS 17->376 DPAL_ECOLI 7e-51 35.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22121.1 GT:GENE ygeX GT:PRODUCT Pyridoxal-phosphate dependent enzyme GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 1251973..1253115 GB:FROM 1251973 GB:TO 1253115 GB:DIRECTION + GB:GENE ygeX GB:PRODUCT Pyridoxal-phosphate dependent enzyme GB:PROTEIN_ID AAZ22121.1 GB:DB_XREF GI:71063118 GB:GENE:GENE ygeX LENGTH 380 SQ:AASEQ MKSIMQKNLWSITSFLENKNYKFNKENIFTQLPEKFIDEAIKAISSWDNYAPTPLVKLNKLNDELKFKNIYYKDEDKRFDLKSFKALGGAFAVYKIASEKKNITVSTATAGNHGRSVAWGAQRLGLKCKIFISEFVSESRAEAMRKLDAEVIRVKGNYDNSLKECIKQSKENNWEIVQDVSWEGYKEVPKLIMAGYTIMIKEILDEVKSNSISHVFLQAGVGGMAAAMIAGFAKLSQDIPKFIIVEPENADCVFQSIKNNKPTSVDIKKETVMGGMSCGDVSSIAWEILKNSSNYCLTISDEAISTTVALLAEKRLSDEKIIAGECAVPGIIALISSFNNKEYLDKLELNEQSNVLLFGCEGLTDSAMYQKLLSDGLQKI GT:EXON 1|1-380:0| BL:SWS:NREP 1 BL:SWS:REP 17->376|DPAL_ECOLI|7e-51|35.9|357/398| SEG 219->233|agvggmaaamiagfa| BL:PDB:NREP 1 BL:PDB:REP 53->357|1tdjA|1e-14|30.6|291/494| RP:PDB:NREP 1 RP:PDB:REP 37->380|2c2bA|7e-36|12.4|323/443| RP:PFM:NREP 1 RP:PFM:REP 52->333|PF00291|8e-20|33.5|263/293|PALP| HM:PFM:NREP 1 HM:PFM:REP 48->337|PF00291|9e-57|30.2|265/297|PALP| GO:PFM:NREP 3 GO:PFM GO:0003824|"GO:catalytic activity"|PF00291|IPR001926| GO:PFM GO:0008152|"GO:metabolic process"|PF00291|IPR001926| GO:PFM GO:0030170|"GO:pyridoxal phosphate binding"|PF00291|IPR001926| RP:SCP:NREP 1 RP:SCP:REP 34->377|1tdjA1|3e-44|19.7|320/331|c.79.1.1| HM:SCP:REP 46->378|1p5jA_|1.1e-67|30.9|317/0|c.79.1.1|1/1|Tryptophan synthase beta subunit-like PLP-dependent enzymes| OP:NHOMO 395 OP:NHOMOORG 312 OP:PATTERN -----1-----------1-----------------1---------------------1--11------ -1--------------------------------------1-------------------------1-----------1---11-------1-1--------11--------------------------------111-------1------11---------------1----11------2------------------1----1---11-------121--1111111-122222222222222111111-------1------------1----------------------------------------------------11111111111-211----21-2--1---22-1---1-------11-------------------1-------------------1--1---1-------12-111-------1-----111--------2------------------------------------1--1---11--211112-----11--------11--1-------------111----------------------------1--11------------------------1-1-111111---------11--11121--1-1---2-------2------1---1---1---------11112112222222222-2222222222222222221212-1111212221222221212212111112--111111111111------------------111111-111-1111------1---------------1---------------1-1111111121211-----------------111-----------------------1--------1-------------------- -----2------11-111-1111212111----1111111111-----111121111-------1-------111---------1-1---2-1---------1111--2---------------------1--------------------------------11------1-------1---------1--------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 370 STR:RPRED 97.4 SQ:SECSTR ##########GGHHHHHHHHHHHTTcccTTTTcGGHTccTTTcccHTcccccccEEEcHHHHHHHTcccEEEEETTcccccHHHHHHHHHHHHHHHHTTccccEEEEccccHHHHHHHHHHHHTTccEEEEEETTccccTTHHHHHTTcEEEEEcccHHHHHHHHHHHHHHccEEEcccccHcccTTHHHHHHHHHTHHHHHHHHHTTTccccEEEEEHHHHHHHHHHHHHHTTccccccEEEEEEEGGGcHHHHHHTTTcccccccccccccGGGcccccTTHHHHHHHHTTcEEEEEcHHHHHHHHHHHHTHHHHHTTccccHHHHHHHHHHHHHHcGGHHHHTTcccTTccEEEEEccGGGccHHHHHHHTTccTTc DISOP:02AL 1-4| PSIPRED ccHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHHHHHHcccccccccEEcccHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHcccEEccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHccccEEcccccccHHHHHccccccHHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHccccccEEcHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHHHc //