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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : yhdH
DDBJ      :yhdH         zinc-binding alcohol dehydrogenase
Swiss-Prot:             

Homologs  Archaea  15/68 : Bacteria  479/915 : Eukaryota  146/199 : Viruses  0/175   --->[See Alignment]
b.35.1c.2.1
:333 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->332 1o8cC PDBj 4e-62 37.8 %
:RPS:PDB   1->331 2c0cA PDBj 2e-37 21.8 %
:RPS:SCOP  6->135 1a71A1  b.35.1.2 * 5e-13 22.3 %
:RPS:SCOP  120->295 1o89A2  c.2.1.1 * 5e-31 43.0 %
:HMM:SCOP  5->146 1o89A1 b.35.1.2 * 3.5e-38 35.2 %
:HMM:SCOP  119->303 1v3uA2 c.2.1.1 * 8e-40 30.7 %
:RPS:PFM   165->272 PF00107 * ADH_zinc_N 3e-05 32.4 %
:HMM:PFM   165->277 PF00107 * ADH_zinc_N 4.4e-19 28.3 113/130  
:HMM:PFM   32->90 PF08240 * ADH_N 5.5e-07 30.5 59/109  
:BLT:SWISS 6->332 YHDH_ECOLI 1e-61 37.8 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22048.1 GT:GENE yhdH GT:PRODUCT zinc-binding alcohol dehydrogenase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1186325..1187326) GB:FROM 1186325 GB:TO 1187326 GB:DIRECTION - GB:GENE yhdH GB:PRODUCT zinc-binding alcohol dehydrogenase GB:PROTEIN_ID AAZ22048.1 GB:DB_XREF GI:71063045 GB:GENE:GENE yhdH LENGTH 333 SQ:AASEQ MSDNFKALVVNQESENFTREVKSIDKSFLKHGDVLVQVDYSDLNYKDALILNNGAKLVKEFPHIPGIDFAGTVLESDNSKFIKGDEVILTGWRVGEIYFGGYSQFAKVNGDYLVKKPKDISSKQAMILGTAGLTALLCSFAIKAREELLLGEKVKDVLVTGASGGVGSIAVMILNKFGYDVTAVTGKAENEKYLRSLGAKNIINKADLDKDARPLDKGLWDGVVDTVGGKILANALAQTRDNGIVAACGNASDYKLNTTVMPFIIRGVKLWGINSVTASIKRREFVWNEVKSLIDFEQLEKSIKTVSLEDLIDIYPKMLKGETSGRYIVDLNK GT:EXON 1|1-333:0| BL:SWS:NREP 1 BL:SWS:REP 6->332|YHDH_ECOLI|1e-61|37.8|323/324| BL:PDB:NREP 1 BL:PDB:REP 6->332|1o8cC|4e-62|37.8|323/323| RP:PDB:NREP 1 RP:PDB:REP 1->331|2c0cA|2e-37|21.8|317/353| RP:PFM:NREP 1 RP:PFM:REP 165->272|PF00107|3e-05|32.4|108/128|ADH_zinc_N| HM:PFM:NREP 2 HM:PFM:REP 165->277|PF00107|4.4e-19|28.3|113/130|ADH_zinc_N| HM:PFM:REP 32->90|PF08240|5.5e-07|30.5|59/109|ADH_N| GO:PFM:NREP 3 GO:PFM GO:0008270|"GO:zinc ion binding"|PF00107|IPR013149| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00107|IPR013149| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00107|IPR013149| RP:SCP:NREP 2 RP:SCP:REP 6->135|1a71A1|5e-13|22.3|121/198|b.35.1.2| RP:SCP:REP 120->295|1o89A2|5e-31|43.0|172/177|c.2.1.1| HM:SCP:REP 5->146|1o89A1|3.5e-38|35.2|142/147|b.35.1.2|1/1|GroES-like| HM:SCP:REP 119->303|1v3uA2|8e-40|30.7|179/0|c.2.1.1|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 1299 OP:NHOMOORG 640 OP:PATTERN -------122222232--------------1-------------------11---------122---- -1-13112222-1-1------2--16-----1122222422-111-1--21121111---12--312221-----------1-1---1-------------1-1-7-111--------------------1---1122211---2-2-2211------------1-11112------------211-----11366666556-4654451111-1444122225532232313-23222232233222411233-2-22----13211214-2-1-111111---1---1111-1-1111-1--1-------------------21-1-----------1--------------------------------11-41--------211111-122231------------23122422232-4333323563222211-134425423311111111134--2-1-----------------------------21-1-1151211221221----1124-----11-42532-122113111314321-13--1------------1223--1-1----------211111-12122223--1--------------------------21221121512-1111111-1111-11222--11212------22131111113122211-111111211112111111111222112111111111111111121111111--122222222222---111-112222-1123-----------------112-12212-1111-32211-221412----------2112111112121123--1-----1111--1-22--11----------------------------------------------11- --2111--2---11-234124736272212-221212222121---63577AEF-132131322322--1133-122221--1-2-23-283332432214-3261-121-233--11----222222-6A2-3321---3-252-22122113-1213353-22------2232-1--7--1-45464323--64361 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 333 STR:RPRED 100.0 SQ:SECSTR HccEEEEEEEccccccHHHHEEEEEcccccTTEEEEEEEEEEccTTHHHHHTTTTcTTccccEEcccEEEEEEEEETGGGTccTTcEEEcEEEEEEEcccccccEEEEEGGGcEEcccccHHHHTTTTHHHHHHHHHHHHTHHTTTcccTTcEETccEETTTTcTTHHHHHHHHHHTTcEEEEEEccHHHHHHHHHTTccEEEETccHHHHHHHHcTTcEEEEEEcccTHHHHHHHHHEEEEEEEEEcccGGGTTcccccccccEEEccGGGcGGGHHHHHHHHHHTTcccccEEccTTcTTcccccTTHHHHHHHHHHTTccccEEEEEcTc DISOP:02AL 1-2| PSIPRED ccccEEEEEEEEcccccEEEEEEccccccccccEEEEEEEEEEcHHHHHHHcccccccccccccccEEEEEEEEEccccccccccEEEEEEcccccccccccEEEEEEcHHHEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHccccEEEccccHHHHHHHHccccEEEEEEcccHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHccEEEEEEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEEcHHHHHHHHHHHHccccEEEEEEEEcc //