[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : yiaK
DDBJ      :yiaK         hypothetical oxidoreductase yiaK
Swiss-Prot:             

Homologs  Archaea  24/68 : Bacteria  223/915 : Eukaryota  76/199 : Viruses  0/175   --->[See Alignment]
c.122.1
:332 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   3->312 1wtjB PDBj 1e-67 41.0 %
:RPS:SCOP  6->331 1nxuA  c.122.1.1 * 1e-69 22.9 %
:HMM:SCOP  4->331 1rfmA_ c.122.1.1 * 2.1e-93 39.9 %
:RPS:PFM   4->312 PF02615 * Ldh_2 1e-49 40.4 %
:HMM:PFM   10->328 PF02615 * Ldh_2 4.2e-70 35.0 317/335  
:BLT:SWISS 4->312 Y1252_PSEAE 7e-63 40.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21774.1 GT:GENE yiaK GT:PRODUCT hypothetical oxidoreductase yiaK GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 949453..950451 GB:FROM 949453 GB:TO 950451 GB:DIRECTION + GB:GENE yiaK GB:PRODUCT hypothetical oxidoreductase yiaK GB:PROTEIN_ID AAZ21774.1 GB:DB_XREF GI:71062771 GB:GENE:GENE yiaK LENGTH 332 SQ:AASEQ MSTVPLTLKEILELAKKTLLANGCDEENANILADTIMRAERDGSVSHGLFRLPAYVAGLKSKKINGKARPELEIVAPSIIKVLGNNAVAPMVLNFGLPAVIDLAKKNGVAILAIKNSHHMAALWPETEAIAEAGLVGIACTSYKPAVAPAGATKPLYGTNPISFAWPRPGKTPVVYDMATASMAMGEVQIAKREGHKVPLGTGLTKEGKETTDPGEIADGGVILPFGGYKGSSIAMMVELLAGALIGENFSFETAAKDNNDGGPPSGGEFIIAISPEKISGKGWDKHADEFFSKMSTMEGVRLPGERRHKNRLNKGPRNINEELVNKIKSLS GT:EXON 1|1-332:0| BL:SWS:NREP 1 BL:SWS:REP 4->312|Y1252_PSEAE|7e-63|40.4|307/334| SEG 200->212|lgtgltkegkett| BL:PDB:NREP 1 BL:PDB:REP 3->312|1wtjB|1e-67|41.0|310/337| RP:PFM:NREP 1 RP:PFM:REP 4->312|PF02615|1e-49|40.4|307/335|Ldh_2| HM:PFM:NREP 1 HM:PFM:REP 10->328|PF02615|4.2e-70|35.0|317/335|Ldh_2| GO:PFM:NREP 3 GO:PFM GO:0008152|"GO:metabolic process"|PF02615|IPR003767| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF02615|IPR003767| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02615|IPR003767| RP:SCP:NREP 1 RP:SCP:REP 6->331|1nxuA|1e-69|22.9|314/332|c.122.1.1| HM:SCP:REP 4->331|1rfmA_|2.1e-93|39.9|323/344|c.122.1.1|1/1|L-sulfolactate dehydrogenase-like| OP:NHOMO 569 OP:NHOMOORG 323 OP:PATTERN -----11-111111-1----------------11111111111----------11-1-------1--- 1-1-----111---------------------------3---------------------------1--------------2-----------------------111-3-----------------------------------11---------------------------------------11---1-----------------1-22-1------11--------1----------------2----1------1---2211----------------------------------------------------------1-------------11----1--1------22---------------------------1-311--11211-11111111111---2--2-253--2331213333542---1224-1--122--------------1------------------------------2--1--155362332322111-22221111-122-2443------1-11--2-441-------1--------------------------1----------------1-----------------------------------1--1--------------------------------3-21---3225355533-233345433325333333423313--13-3221333332322232212221------------------------------211111-1--1-1-111----------1-11111411-2221-111-----------1---------1-------------------1-------------------------------------------2---------1- ---------------11111111212111111111-11-1111111--12111111111111------------------------------1--------------13-12211-------------------------------------------123-111126313221----17111-----11--11----2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 330 STR:RPRED 99.4 SQ:SECSTR #cEEEEcHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHTTcGGGTGGGHHHHHHHHHTTcccTTcccEEEEEETTEEEEEcTTccHHHHHHHHHHHHHHHHHHHcEEEEEEEEEEcccccHHHHHHHHHTTcEEEEEEccccccccTTccccccccccEEEEEEETTEEEEEEEEccccccHHHHHHHHHTTcccccccEEcTTccEEccHHHHHTTcEEccTTTHHHHHHHHHHHHHHTTTTccccTTccccTTcTTccccEEEEEEEEEcTTTTccccHHHHHHHHHHHHHHTTccccTTHHHHHHHHGGGcEEccHHHHHHHHHH# PSIPRED cccEEEcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccEEEEEccccEEEEEcccccHHHHHHHHHHHHHHHHHHccEEEEEEEcccHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccEEEEEEcccccEEEEEEccHHHHHHHHHHHHHcccccccccEEcccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEcHHHcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccHHHHHHHHHHc //