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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : yidC
DDBJ      :yidC         60 kDa inner membrane protein
Swiss-Prot:OXAA_PELUB   RecName: Full=Inner membrane protein oxaA;

Homologs  Archaea  0/68 : Bacteria  825/915 : Eukaryota  23/199 : Viruses  0/175   --->[See Alignment]
a.59.1
:558 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   70->341 3blcB PDBj 1e-38 17.4 %
:RPS:PDB   382->445 1e91A PDBj 9e-16 10.9 %
:RPS:SCOP  382->445 1e91A  a.59.1.1 * 1e-16 10.9 %
:RPS:PFM   77->168 PF04198 * Sugar-bind 5e-04 28.6 %
:RPS:PFM   354->553 PF02096 * 60KD_IMP 2e-39 45.3 %
:HMM:PFM   352->553 PF02096 * 60KD_IMP 2.4e-63 45.9 185/196  
:BLT:SWISS 1->558 OXAA_PELUB 0.0 100.0 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21288.1 GT:GENE yidC GT:PRODUCT 60 kDa inner membrane protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(459104..460780) GB:FROM 459104 GB:TO 460780 GB:DIRECTION - GB:GENE yidC GB:PRODUCT 60 kDa inner membrane protein GB:NOTE YidC GB:PROTEIN_ID AAZ21288.1 GB:DB_XREF GI:71062285 GB:GENE:GENE yidC LENGTH 558 SQ:AASEQ MDTRNVIAAISLSAAVIILYSLFFQPDPATIKKNLAEQNKIENNEDTPSLDKNENFSKLSRADALKENDRIQFENGSVVGSISLKGAAIDDLTFKEYNIELNRNEKITLLSPRNVEDGYLIESGFVSTNKNIDIPDASTVWEVSGNNKLTNNNPVKLTWSNTQGITFEKHISLDDQFLFTVKEKIINSSDKSYNFYSYGQIIRNELPEISGFYILHEGFLSVLDDELIEEDYDDIQDKKFTQIAQDGFVAISDKFWVTSVIPPKGKEFKTTFDYKNKFRANYISTKGIEVKANSSIEEKIQIIVAAKRVNVIDGYAENLNINKFDLAIDWGFMYFITKPLFFVLDYFFKLLGNYGLAIIAVTICIRLAFFPLANFSFKSMGKMKLLAPEMARLKELHKDDKMKLQQAMMALYKKEKVNPMSGCLPILVQIPVFFALYKVLFVTIEMRHMPFYGWIHDLSDRDPTSLFNVFGLIPWDPPSFLLIGAWPIIMGITMWIQQKLNPTPPDPIQAKIFMFFPVFLTVILAPFPAGLVIYWSFNNIFTMIQQYIVQRKMTIKTT GT:EXON 1|1-558:0| SW:ID OXAA_PELUB SW:DE RecName: Full=Inner membrane protein oxaA; SW:GN Name=oxaA; OrderedLocusNames=SAR11_0466; SW:KW Cell inner membrane; Cell membrane; Complete proteome; Membrane;Transmembrane. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->558|OXAA_PELUB|0.0|100.0|558/558| GO:SWS:NREP 4 GO:SWS GO:0005886|"GO:plasma membrane"|Cell inner membrane| GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0016021|"GO:integral to membrane"|Transmembrane| TM:NTM 6 TM:REGION 5->26| TM:REGION 324->346| TM:REGION 358->380| TM:REGION 422->444| TM:REGION 478->500| TM:REGION 511->533| SEG 6->19|viaaislsaaviil| SEG 223->237|lddelieedyddiqd| RP:PDB:NREP 2 RP:PDB:REP 70->341|3blcB|1e-38|17.4|259/274| RP:PDB:REP 382->445|1e91A|9e-16|10.9|64/85| RP:PFM:NREP 2 RP:PFM:REP 77->168|PF04198|5e-04|28.6|91/254|Sugar-bind| RP:PFM:REP 354->553|PF02096|2e-39|45.3|181/191|60KD_IMP| HM:PFM:NREP 1 HM:PFM:REP 352->553|PF02096|2.4e-63|45.9|185/196|60KD_IMP| GO:PFM:NREP 4 GO:PFM GO:0030246|"GO:carbohydrate binding"|PF04198|IPR007324| GO:PFM GO:0030528|"GO:transcription regulator activity"|PF04198|IPR007324| GO:PFM GO:0016021|"GO:integral to membrane"|PF02096|IPR001708| GO:PFM GO:0051205|"GO:protein insertion into membrane"|PF02096|IPR001708| RP:SCP:NREP 1 RP:SCP:REP 382->445|1e91A|1e-16|10.9|64/85|a.59.1.1| OP:NHOMO 953 OP:NHOMOORG 848 OP:PATTERN -------------------------------------------------------------------- 11111111111111----------------------1---11111-1111111111-1111111112222111112111111211111111111111--1111111111111111111111111111111111111111111-1111111111111111111111111111111111111111--1111111212222222222222222222112222223111111111111---------------221-121111121212222112221112221111111-111111111111111111111111111---------121111111111111112211111111111-1111111-11111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111112111111111111-1111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111-111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1----------------------111--11111111 --------------------------------------------------------------------------------------1---------------------3------------------------------------------------------------1-----1213N333322115-3132--1-3 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 333 STR:RPRED 59.7 SQ:SECSTR #####################################################################EEEEEccccEEEEETcTccEEEEEEEEEEccTTcccEEEccEEccTccEEEEEEEEccTTTTcGGGcccccccccccEEccTTcEEEEEEEcTTccEEEEEEEEETccEEEEEEEEEccccccEEEcEEEEEEEEccccccccccccEEEEETTEEEEEEcHHHHHTTcccEEEEcccEEEE#ETTEEEEEEEEccccEEEEEEETTEEEEEEEccccEEEcTTcE#EEEEEEEEEEccHHHHHHHcTTG#cTTTTHHHHHHHHHHHTcccc########################################HHHHHHHHHHHHHHHTcccHHHHHHHHHHHHHHTTccccccccccccHHHHHHHHHHHTcccHH################################################################################################################# DISOP:02AL 28-65, 394-406, 497-510, 555-558| PSIPRED cccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHcccccEEEEEccEEEEEEEccccEEEEEEEccccccccccccEEEEcccccccEEEEEEEEEccccccccccccEEEEEcccEEEcccEEEEEEEEccccEEEEEEEEEcccEEEEEEEEEEcccccEEEEEccEEEEEccccccccEEEEEccEEEEccccEEEEcHHHHccccccccccccEEEEEEcEEEEEEccccccccEEEEEccccEEEEEEEcccccccccccEEEEEEEEEcHHHHHHHHHHcccccccccHHEEEHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHccccccEEEcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc //