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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : yyaM
DDBJ      :yyaM         hypothetical transport protein yyaM
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  18/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
f.39.1
:284 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  32->128 1s7bA  f.39.1.1 * 2e-04 8.2 %
:HMM:SCOP  30->136 1s7bA_ f.39.1.1 * 1.5e-07 24.8 %
:HMM:SCOP  175->284 1s7bA_ f.39.1.1 * 9.6e-06 16.8 %
:HMM:PFM   8->128 PF00892 * EamA 7e-15 30.0 120/126  
:HMM:PFM   160->278 PF00892 * EamA 3.5e-12 23.2 112/126  
:BLT:SWISS 1->256 YYAM_BACSU 4e-13 25.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21683.1 GT:GENE yyaM GT:PRODUCT hypothetical transport protein yyaM GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(836512..837366) GB:FROM 836512 GB:TO 837366 GB:DIRECTION - GB:GENE yyaM GB:PRODUCT hypothetical transport protein yyaM GB:PROTEIN_ID AAZ21683.1 GB:DB_XREF GI:71062680 GB:GENE:GENE yyaM LENGTH 284 SQ:AASEQ MFLAVIGFGSGPPFVKLALEEFQIVDLLAVRFAIAFLLMLTFALIMRVDLSIKKIGLAPFLMGLLNPFLVTLAFHVGLMLTSPINGVAIISTMPIMQPFVAKIFLNEKIEIKVLIGAFITIIGTYILLSSQTIIGQGNYIGDFIIFAGMTLASINEVIGRKKMQTNVNQLGVNTYQYFTGFILSFLILFIIWPNSTFGYSFHLEFTPSVIAAITLSFITFGSYLFYNYALRRVPIGRISLMYPLTGPIGALSAWVVIDAEITLKIFISLGIILVGTVIPYINKK GT:EXON 1|1-284:0| BL:SWS:NREP 1 BL:SWS:REP 1->256|YYAM_BACSU|4e-13|25.4|244/305| TM:NTM 7 TM:REGION 24->46| TM:REGION 57->79| TM:REGION 111->133| TM:REGION 175->196| TM:REGION 204->226| TM:REGION 237->259| TM:REGION 261->282| SEG 181->191|filsflilfii| HM:PFM:NREP 2 HM:PFM:REP 8->128|PF00892|7e-15|30.0|120/126|EamA| HM:PFM:REP 160->278|PF00892|3.5e-12|23.2|112/126|EamA| RP:SCP:NREP 1 RP:SCP:REP 32->128|1s7bA|2e-04|8.2|97/106|f.39.1.1| HM:SCP:REP 30->136|1s7bA_|1.5e-07|24.8|105/106|f.39.1.1|1/2|Multidrug resistance efflux transporter EmrE| HM:SCP:REP 175->284|1s7bA_|9.6e-06|16.8|101/106|f.39.1.1|2/2|Multidrug resistance efflux transporter EmrE| OP:NHOMO 21 OP:NHOMOORG 18 OP:PATTERN -------------------------------------------------------------------- ------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------1----------11-11-121-1---1--1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------1-------------------------------------------------------------1----------------1--------11------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 284-285| PSIPRED cHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccc //