[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Rickettsia conorii str. Malish 7 (rcon0)
Gene : AAL03103.1
DDBJ      :             probable RND efflux transporter-like protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  363/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
d.225.1d.58.44f.35.1
:239 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->226 1t9uA PDBj 8e-08 22.7 %
:RPS:PDB   1->233 3d9bA PDBj 3e-38 34.6 %
:RPS:SCOP  40->123 1iwgA4  d.58.44.1 * 5e-16 12.2 %
:RPS:SCOP  193->232 1iwgA7  f.35.1.1 * 7e-04 15.0 %
:HMM:SCOP  2->84 1iwgA6 d.225.1.1 * 4.7e-09 30.1 %
:HMM:SCOP  79->230 1iwgA8 f.35.1.1 * 7.3e-19 28.7 %
:RPS:PFM   1->230 PF00873 * ACR_tran 2e-19 26.1 %
:HMM:PFM   2->232 PF00873 * ACR_tran 6.4e-62 31.6 231/1021  
:BLT:SWISS 1->228 MDTB_SERP5 9e-33 39.0 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL03103.1 GT:GENE AAL03103.1 GT:PRODUCT probable RND efflux transporter-like protein GT:DATABASE GIB00062CH01 GT:ORG rcon0 GB:ACCESSION GIB00062CH01 GB:LOCATION complement(557487..558206) GB:FROM 557487 GB:TO 558206 GB:DIRECTION - GB:PRODUCT probable RND efflux transporter-like protein GB:PROTEIN_ID AAL03103.1 GB:DB_XREF GI:15619646 LENGTH 239 SQ:AASEQ MQIDRYKAAKLGILVEHVQNILYAAYGAEQISTLYTPTAQYDVILELDPKYQTDSSMLSLVNINSTSGNLVTLTTLAKIVNTVGPLSISHFGQLPSVMVSFNLQDGYSISDAVPKVNQAIRELQMLTTITGSFQDTVQACQPSFSDLGLLLGLAVIVIYIILGMLYESFVHPITILLGLPTAILGALLALLIFNSELDMYGFVGLIMLIGIVKKNAIMIIDFALELERTGNKSSACSNL GT:EXON 1|1-239:0| BL:SWS:NREP 1 BL:SWS:REP 1->228|MDTB_SERP5|9e-33|39.0|228/1039| TM:NTM 3 TM:REGION 144->166| TM:REGION 172->194| TM:REGION 202->224| SEG 147->163|lglllglaviviyiilg| SEG 172->192|pitillglptailgallalli| BL:PDB:NREP 1 BL:PDB:REP 1->226|1t9uA|8e-08|22.7|220/1013| RP:PDB:NREP 1 RP:PDB:REP 1->233|3d9bA|3e-38|34.6|231/1045| RP:PFM:NREP 1 RP:PFM:REP 1->230|PF00873|2e-19|26.1|230/1014|ACR_tran| HM:PFM:NREP 1 HM:PFM:REP 2->232|PF00873|6.4e-62|31.6|231/1021|ACR_tran| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00873|IPR001036| GO:PFM GO:0006810|"GO:transport"|PF00873|IPR001036| GO:PFM GO:0016020|"GO:membrane"|PF00873|IPR001036| RP:SCP:NREP 2 RP:SCP:REP 40->123|1iwgA4|5e-16|12.2|82/97|d.58.44.1| RP:SCP:REP 193->232|1iwgA7|7e-04|15.0|40/199|f.35.1.1| HM:SCP:REP 2->84|1iwgA6|4.7e-09|30.1|83/88|d.225.1.1|1/1|Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains| HM:SCP:REP 79->230|1iwgA8|7.3e-19|28.7|143/223|f.35.1.1|1/1|Multidrug efflux transporter AcrB transmembrane domain| OP:NHOMO 739 OP:NHOMOORG 367 OP:PATTERN -------------------------------------------------------------------- 127-----------------------------------------------------------------------------------111111-211-----3-1-523-3--------------11-121-1-1-11--------------------------1--2--42---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------21-2--11----3444453333333---1-111----22422523-22-4113111111--5411-----------22222222233312--------------1-1112211-22-----1----2333232222223111122343333332243454-1222-12--43312413212--22---------1-3121--1---341111-11-1113-3111111-3-1---------1-1111111----122--121--11112222222333333334333----111------22222342222222222-2222222222222222222222222222222222222222222222-1122--222222221222----23222----11-3----------------------4---4333333333313232233---------1-111111111111135131331111121------1111-----------------------------------------------3- --------------------------------------------------------------------------------------------------------------------------------------------------------------3------1-------1--------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 233 STR:RPRED 97.5 SQ:SECSTR EEEcHHHHHHHTccHHHHHHHHHHHHHcEEcccEEccccEEEEEEEEcGGGcccGGGGGGcEEEcccccEEEHHHHEEEEEEccccEEEEETTEEEEEEEEEccTTccHHHHHHHHHHHTTTccTTTTEEEEEcTHHHHcccTTTcHHHHHHHHHHHHHHHHHHHHTcccHHHHHHTTHHHHHHHHHHHHHTTcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccc###### DISOP:02AL 228-236| PSIPRED ccccHHHHHHHcccHHHHHHHHHHHHcccEEEEEEEccEEEEEEEEEcHHHHccHHHHHHcccccccccEEEEccEEEEEEEEcccHHHHccccEEEEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHcc //