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Rickettsia conorii str. Malish 7 (rcon0)
Gene : ddlB
DDBJ      :ddlB         D-alanine--D-alanine ligase
Swiss-Prot:DDL_RICCN    RecName: Full=D-alanine--D-alanine ligase;         EC=6.3.2.4;AltName: Full=D-alanylalanine synthetase;AltName: Full=D-Ala-D-Ala ligase;

Homologs  Archaea  2/68 : Bacteria  864/915 : Eukaryota  13/199 : Viruses  0/175   --->[See Alignment]
c.30.1d.142.1
:321 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   25->317 1iovA PDBj 9e-44 36.4 %
:RPS:PDB   22->314 1e4eB PDBj 4e-34 28.4 %
:RPS:SCOP  22->115 1ehiA1  c.30.1.2 * 8e-26 34.0 %
:RPS:SCOP  116->317 1e4eA2  d.142.1.1 * 4e-43 30.8 %
:HMM:SCOP  21->116 1iowA1 c.30.1.2 * 1.8e-30 55.9 %
:HMM:SCOP  116->314 1e4eA2 d.142.1.1 * 1.8e-39 31.0 %
:RPS:PFM   25->106 PF01820 * Dala_Dala_lig_N 7e-13 53.1 %
:RPS:PFM   129->315 PF07478 * Dala_Dala_lig_C 6e-32 40.5 %
:HMM:PFM   128->315 PF07478 * Dala_Dala_lig_C 8.1e-44 34.9 186/203  
:HMM:PFM   24->65 PF01820 * Dala_Dala_lig_N 2.2e-10 40.5 42/117  
:HMM:PFM   72->106 PF01820 * Dala_Dala_lig_N 8.2e-14 51.4 35/117  
:BLT:SWISS 1->321 DDL_RICCN 0.0 100.0 %
:PROS 83->94|PS00843|DALA_DALA_LIGASE_1
:PROS 259->288|PS00844|DALA_DALA_LIGASE_2

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL02871.1 GT:GENE ddlB GT:PRODUCT D-alanine--D-alanine ligase GT:DATABASE GIB00062CH01 GT:ORG rcon0 GB:ACCESSION GIB00062CH01 GB:LOCATION 334395..335360 GB:FROM 334395 GB:TO 335360 GB:DIRECTION + GB:GENE ddlB GB:PRODUCT D-alanine--D-alanine ligase GB:PROTEIN_ID AAL02871.1 GB:DB_XREF GI:15619394 GB:GENE:GENE ddlB LENGTH 321 SQ:AASEQ MHKYQTHWVEHSIVKILSSTGKKHIALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHGTYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAEGIVVNKSDNIKNDPMKRPYVIKPLTQGSSIGVEVIFAEDDFNFADYDFPYGDQVIIEQYIKGRELQVAVLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNCKGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIEEIIKTASFES GT:EXON 1|1-321:0| SW:ID DDL_RICCN SW:DE RecName: Full=D-alanine--D-alanine ligase; EC=6.3.2.4;AltName: Full=D-alanylalanine synthetase;AltName: Full=D-Ala-D-Ala ligase; SW:GN Name=ddl; Synonyms=ddlB; OrderedLocusNames=RC0333; SW:KW ATP-binding; Cell shape; Cell wall biogenesis/degradation;Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese;Metal-binding; Nucleotide-binding; Peptidoglycan synthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->321|DDL_RICCN|0.0|100.0|321/321| GO:SWS:NREP 8 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0008360|"GO:regulation of cell shape"|Cell shape| GO:SWS GO:0007047|"GO:cellular cell wall organization"|Cell wall biogenesis/degradation| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0009252|"GO:peptidoglycan biosynthetic process"|Peptidoglycan synthesis| PROS 83->94|PS00843|DALA_DALA_LIGASE_1|PDOC00659| PROS 259->288|PS00844|DALA_DALA_LIGASE_2|PDOC00659| BL:PDB:NREP 1 BL:PDB:REP 25->317|1iovA|9e-44|36.4|291/306| RP:PDB:NREP 1 RP:PDB:REP 22->314|1e4eB|4e-34|28.4|292/340| RP:PFM:NREP 2 RP:PFM:REP 25->106|PF01820|7e-13|53.1|81/108|Dala_Dala_lig_N| RP:PFM:REP 129->315|PF07478|6e-32|40.5|185/199|Dala_Dala_lig_C| HM:PFM:NREP 3 HM:PFM:REP 128->315|PF07478|8.1e-44|34.9|186/203|Dala_Dala_lig_C| HM:PFM:REP 24->65|PF01820|2.2e-10|40.5|42/117|Dala_Dala_lig_N| HM:PFM:REP 72->106|PF01820|8.2e-14|51.4|35/117|Dala_Dala_lig_N| GO:PFM:NREP 5 GO:PFM GO:0005618|"GO:cell wall"|PF01820|IPR011127| GO:PFM GO:0008716|"GO:D-alanine-D-alanine ligase activity"|PF01820|IPR011127| GO:PFM GO:0009252|"GO:peptidoglycan biosynthetic process"|PF01820|IPR011127| GO:PFM GO:0008716|"GO:D-alanine-D-alanine ligase activity"|PF07478|IPR011095| GO:PFM GO:0009252|"GO:peptidoglycan biosynthetic process"|PF07478|IPR011095| RP:SCP:NREP 2 RP:SCP:REP 22->115|1ehiA1|8e-26|34.0|94/132|c.30.1.2| RP:SCP:REP 116->317|1e4eA2|4e-43|30.8|201/211|d.142.1.1| HM:SCP:REP 21->116|1iowA1|1.8e-30|55.9|93/0|c.30.1.2|1/1|PreATP-grasp domain| HM:SCP:REP 116->314|1e4eA2|1.8e-39|31.0|197/0|d.142.1.1|1/1|Glutathione synthetase ATP-binding domain-like| OP:NHOMO 1078 OP:NHOMOORG 879 OP:PATTERN ----------------------------------------------1--------------------1 111-311111121111111-11111111111111111111211211112331111111112232222121211111112211211211111111112--11111111--111111111111111-1111111112111111111111111111111111111111111113111111111111111111111111111122212222221111112221112111111111331111111111111111111121111111111111111111111111111111111111111121111111111111111111111121111421111111111111211122132111112112211111111112111111-211111111114221111111122222222221-111111111211211123222211111111131111111111111111111111111--------1111111111111111111111111111111111111111111111111112111111111111111111111111111112111111111111111122111111111-1111111111222232221111111111111111111111111111111111111212111111111111111111-1111111----22112212222222222-2222222222222122222222111112221222222222212222222221121111111111111111111111111121111111111111111111111111111122221212121331222111-111111111211111111112212222222111111111111111111111111--------------------------1212213112121 -----------------------1-1---------------------------------111---------------------------------1-------------------------------------------------------------------1---------1-----------2--2-31------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 314 STR:RPRED 97.8 SQ:SECSTR ###ccccHHHHHHHHHHHccccEEEEEEEEcccTTHHHHHHHHHHHHTTccTTTEEEEEEEEcTTccccEEEEEccEEEEccccTTTTccHHHHHHHHHTcccccccHHHHHHHHcHHHHHHHHHHTTcccccEEEEcccccccGGGccccEEEEEccccTTTTcEEEccGGGHHHHHHHTTTcccEEEEEccccEEEEEEEEEcTTccEEcccccccGGGcccGGGccccEEEEccccccHHHHHHHHHHHHHHHHHTTccEEEEEEEEEcTTcccEEEEEEEccccccTTcHHHHHHHHTTccHHHHHHHHHcGG#### DISOP:02AL 1-2| PSIPRED ccccEEEEEEHHEEEEHHHccccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHcccEEEcccHHHHHHHHcHHHHHHHHHHccccccccEEEccHHHHHHHHccccEEEEEccccccEEEEEEccHHHHHHHHHHHcccccEEEEEEcccEEEEEEEEcccEEEEEEEEEccccEEccccEEEcccEEEEEcccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccEEEEEEEEccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccc //