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Rickettsia conorii str. Malish 7 (rcon0)
Gene : gyrB1
DDBJ      :gyrB1        DNA gyrase subunit B
Swiss-Prot:PARE_RICCN   RecName: Full=DNA topoisomerase 4 subunit B;         EC=5.99.1.-;AltName: Full=Topoisomerase IV subunit B;

Homologs  Archaea  22/68 : Bacteria  910/915 : Eukaryota  191/199 : Viruses  10/175   --->[See Alignment]
c.52.1d.122.1d.14.1d.173.1d.175.1e.11.1
:662 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   20->405 1s16A PDBj 1e-72 41.9 %
:BLT:PDB   433->645 3fofC PDBj 1e-39 49.5 %
:RPS:PDB   31->395 3cwvB PDBj 9e-68 21.9 %
:RPS:PDB   318->622 1dc1B PDBj 1e-69 11.5 %
:RPS:SCOP  19->194 1j6rA  d.173.1.2 * 3e-41 11.1 %
:RPS:SCOP  239->328 1pyyA3  d.175.1.1 * 9e-10 6.8 %
:RPS:SCOP  318->622 1dc1A  c.52.1.11 * 3e-69 11.1 %
:HMM:SCOP  19->224 1s16A2 d.122.1.2 * 9.2e-53 42.3 %
:HMM:SCOP  238->403 1pvgA1 d.14.1.3 * 2e-40 32.7 %
:HMM:SCOP  415->647 1bjtA_ e.11.1.1 * 5.3e-78 53.5 %
:RPS:PFM   242->404 PF00204 * DNA_gyraseB 1e-21 35.0 %
:RPS:PFM   439->541 PF01751 * Toprim 9e-10 39.2 %
:RPS:PFM   584->645 PF00986 * DNA_gyraseB_C 1e-15 58.1 %
:HMM:PFM   242->411 PF00204 * DNA_gyraseB 3.4e-44 32.0 169/173  
:HMM:PFM   583->645 PF00986 * DNA_gyraseB_C 2.1e-29 54.0 63/65  
:HMM:PFM   46->187 PF02518 * HATPase_c 1.8e-17 25.0 104/111  
:HMM:PFM   440->535 PF01751 * Toprim 2.9e-08 31.8 66/96  
:BLT:SWISS 1->662 PARE_RICCN 0.0 100.0 %
:PROS 443->451|PS00177|TOPOISOMERASE_II

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL02847.1 GT:GENE gyrB1 GT:PRODUCT DNA gyrase subunit B GT:DATABASE GIB00062CH01 GT:ORG rcon0 GB:ACCESSION GIB00062CH01 GB:LOCATION 310939..312927 GB:FROM 310939 GB:TO 312927 GB:DIRECTION + GB:GENE gyrB1 GB:PRODUCT DNA gyrase subunit B GB:PROTEIN_ID AAL02847.1 GB:DB_XREF GI:15619368 GB:GENE:GENE gyrB1 LENGTH 662 SQ:AASEQ MSDLFSFNKEKKNKLVDNNYSAKDIEVLEGLEPVRKRPGMYIGGTDSNAMHHLVSEVLDNAMDEAVAGFASIITITMHHDHSITIFDNGRGIPIDNHPKFPDKSALEVILTTLHSGGKFSNNVYHTAGGLHGVGISVVNALSKHLEIKVYKQGKLYSQSYSKGEKLTDLICEEASKRLRGTSINFTPDPEIFSEKLHFNPKKIYELARSKAYLYRGVTIEWACEVEVQSDIPKKALISFPNGLKDYLSSKITLDNLVIPGIFAGNIESKSDRIKLEWAICWQNNDSSAFVQSYCNTVPTPQGGTHEQGLKSAILRGLKAYGEMIGNKKAANLTIEDILETASVVLSIFIAEPSFQGQTKEKLVSNGVSKPVENIIKDHFDHFLSSDKALATNLLEHVISIAEFRISKKNEKNISRKNATQKLRLPGKLADCTRTSPEGTELFIVEGDSAGGSAKQARNRETQAVLPLWGKVLNVASSTLEKIVNNQAIQDLEIALACGSLKNYKKENLRYEKIIIMTDADVDGAHIASLLMTFFFLRMPKLVEEGHLYLAKPPLYRLTQSNKTYYAGDEEEKAKLMDKLLKASKAKIEVGRFKGLGEMMPAQLKETTMHPEKRSLLKVTLADFQNVDKIVDDLMGKKPEKRFQFIYEQALVKMDKIISELDI GT:EXON 1|1-662:0| SW:ID PARE_RICCN SW:DE RecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.-;AltName: Full=Topoisomerase IV subunit B; SW:GN Name=parE; OrderedLocusNames=RC0309; SW:KW ATP-binding; Complete proteome; Isomerase; Nucleotide-binding;Topoisomerase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->662|PARE_RICCN|0.0|100.0|662/662| GO:SWS:NREP 4 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0016853|"GO:isomerase activity"|Isomerase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0003916|"GO:DNA topoisomerase activity"|Topoisomerase| PROS 443->451|PS00177|TOPOISOMERASE_II|PDOC00160| BL:PDB:NREP 2 BL:PDB:REP 20->405|1s16A|1e-72|41.9|370/380| BL:PDB:REP 433->645|3fofC|1e-39|49.5|190/196| RP:PDB:NREP 2 RP:PDB:REP 31->395|3cwvB|9e-68|21.9|306/311| RP:PDB:REP 318->622|1dc1B|1e-69|11.5|287/311| RP:PFM:NREP 3 RP:PFM:REP 242->404|PF00204|1e-21|35.0|160/169|DNA_gyraseB| RP:PFM:REP 439->541|PF01751|9e-10|39.2|102/110|Toprim| RP:PFM:REP 584->645|PF00986|1e-15|58.1|62/65|DNA_gyraseB_C| HM:PFM:NREP 4 HM:PFM:REP 242->411|PF00204|3.4e-44|32.0|169/173|DNA_gyraseB| HM:PFM:REP 583->645|PF00986|2.1e-29|54.0|63/65|DNA_gyraseB_C| HM:PFM:REP 46->187|PF02518|1.8e-17|25.0|104/111|HATPase_c| HM:PFM:REP 440->535|PF01751|2.9e-08|31.8|66/96|Toprim| GO:PFM:NREP 10 GO:PFM GO:0003677|"GO:DNA binding"|PF00204|IPR013506| GO:PFM GO:0003918|"GO:DNA topoisomerase (ATP-hydrolyzing) activity"|PF00204|IPR013506| GO:PFM GO:0005524|"GO:ATP binding"|PF00204|IPR013506| GO:PFM GO:0005694|"GO:chromosome"|PF00204|IPR013506| GO:PFM GO:0006265|"GO:DNA topological change"|PF00204|IPR013506| GO:PFM GO:0003677|"GO:DNA binding"|PF00986|IPR002288| GO:PFM GO:0003918|"GO:DNA topoisomerase (ATP-hydrolyzing) activity"|PF00986|IPR002288| GO:PFM GO:0005524|"GO:ATP binding"|PF00986|IPR002288| GO:PFM GO:0005694|"GO:chromosome"|PF00986|IPR002288| GO:PFM GO:0006265|"GO:DNA topological change"|PF00986|IPR002288| RP:SCP:NREP 3 RP:SCP:REP 19->194|1j6rA|3e-41|11.1|171/197|d.173.1.2| RP:SCP:REP 239->328|1pyyA3|9e-10|6.8|88/120|d.175.1.1| RP:SCP:REP 318->622|1dc1A|3e-69|11.1|287/310|c.52.1.11| HM:SCP:REP 19->224|1s16A2|9.2e-53|42.3|201/213|d.122.1.2|1/1|ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase| HM:SCP:REP 238->403|1pvgA1|2e-40|32.7|156/161|d.14.1.3|1/1|Ribosomal protein S5 domain 2-like| HM:SCP:REP 415->647|1bjtA_|5.3e-78|53.5|230/760|e.11.1.1|1/1|Type II DNA topoisomerase| OP:NHOMO 1979 OP:NHOMOORG 1133 OP:PATTERN -----------------------111111111-----------1111111111--------111---- 1111211111111111112-12111311111122221111212122222222222222222222221223222222221111111111222212222112222222222222222222222222211111111111111111111111111111111111111111111111111111111111111111112222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222322222234222222212122222222222221222222222111221122111121111111111113222222222222222222222222222222222-22223222222222222222222222222222222222222222222222222221111111111112222222222222111112222222222222222222222222222222232222222222222222222222221121222222222111222112121111111111111111111111132111111111111111111111111111222222222222222222222222222222221-2222211111122222222222222222-22122222222222222222222222222222222222222222222222221222222222222112222222222222322222222222212222222222222222222222222222222222222222222222222222222222222222222222222212222222222222221211112-22222222222222222221111111111122 22-1221162211121111111111111111111111111-111111111111111111111111111-111111111111-111111-12112111111121111114212223341212222221319F2-426121221223221122-13-422313812121111442123222F2222252391533442122 ---11--------------1---------------111-1----------------------------------------------------------------------------------------------------------------------------------111-- STR:NPRED 653 STR:RPRED 98.6 SQ:SECSTR #########ccccccccccccGGGcccccTHHHHHHcHHHHHccccHHHHHHHHHHHHHHHHHHHHTTcccEEEEEEcTTccEEEEEEcccHHHHHHHHHcTccHHHHHTEEEEEEEEcccccccccTHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEETTEEccccccccccccTEEEEEEEEEcTTTcccEccccHHHHHHHHHHHHHHcTTcEEEEEETTTHHHHHTEEEEEEcTTHHHHHHHHHHTTccccccccEEEEEEEGGTTEEEEEEEEEcccccccEEEEEETTEEcTTccHHHHHHHHHHHHHHcGGGGTcccGGGccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccGGGGGGcGGGHHHHHHHTTccHHHHTTccHHHHHHHHHHHcEcccccccEEHHHHTTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEETTcTTcccEEEcccccTTGGGGEEEEEEEETTEEEEEEEEETTTTEEEEEEEEEcccccGGGEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHTTcHHHHHcccEEEEEEccccHHHHHHHHHHHHHTcccEEEETTcHHHHHHcHHHHHcccTTTcccHHHHHHHHHHHHTTcccHHHHHHHH DISOP:02AL 1-25, 170-174, 404-427| PSIPRED cccccccccccccccccccccHHHEEEEccccHHHccccEEEcccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccEEEEEEccEEcccccccccccccEEEEEEEEEEccccccccEEEEEccEEccEEEEEEEEccEEEEEEEEccEEEEEEEEcccEEccEEEEEcccccccEEEEEEEcHHHccccccccHHHHHHHHHHHHHHccccEEEEEccEEEcccccEEEEEEcccHHHHHHHHHHcccccccccEEEEEEEcccccEEEEEEEEEEEccccEEEEEEEccEEccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHcccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHcccccccEEEEEEcccHHHHHHcccccccEEEEEEcccEEEcccccHHHHHHHHHHHHHHHHHcccccccccHHHcccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccEEEEcccEEEEEEccEEEEEccHHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHccccHHcccc //