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Rickettsia conorii str. Malish 7 (rcon0)
Gene : mfd
DDBJ      :mfd          transcription-repair coupling factor
Swiss-Prot:MFD_RICCN    RecName: Full=Transcription-repair-coupling factor;         Short=TRCF;         EC=3.6.1.-;AltName: Full=ATP-dependent helicase mfd;

Homologs  Archaea  0/68 : Bacteria  880/915 : Eukaryota  20/199 : Viruses  0/175   --->[See Alignment]
b.34.18c.37.1d.315.1
:1122 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   28->1121 2eyqB PDBj e-163 33.5 %
:RPS:PDB   14->374 1d9zA PDBj 2e-30 18.1 %
:RPS:PDB   563->1045 1cu1A PDBj 4e-44 8.4 %
:RPS:SCOP  21->323 2b2nA1  c.37.1.19 * 3e-56 22.2 %
:RPS:SCOP  357->435 2eyqA2  c.37.1.19 * 2e-05 15.2 %
:RPS:SCOP  450->523 2eyqA1  b.34.18.1 * 2e-23 37.8 %
:RPS:SCOP  524->760 2eyqA3  c.37.1.19 * 1e-78 46.4 %
:RPS:SCOP  761->969 2eyqA5  c.37.1.19 * 1e-67 44.5 %
:RPS:SCOP  969->1122 2eyqA6  d.315.1.1 * 2e-31 27.3 %
:HMM:SCOP  14->340 2eyqA4 c.37.1.19 * 6.8e-63 32.5 %
:HMM:SCOP  338->450 2eyqA2 c.37.1.19 * 5.8e-06 18.8 %
:HMM:SCOP  447->523 2eyqA1 b.34.18.1 * 1.4e-20 42.9 %
:HMM:SCOP  523->817 1z3iX2 c.37.1.19 * 4.4e-62 29.6 %
:HMM:SCOP  761->971 2eyqA5 c.37.1.19 * 1.7e-51 32.2 %
:HMM:SCOP  969->1124 2eyqA6 d.315.1.1 * 1.1e-32 35.3 %
:RPS:PFM   461->549 PF02559 * CarD_TRCF 1e-16 39.3 %
:RPS:PFM   601->747 PF00270 * DEAD 2e-09 30.5 %
:RPS:PFM   824->889 PF00271 * Helicase_C 7e-04 28.1 %
:RPS:PFM   984->1074 PF03461 * TRCF 4e-17 40.7 %
:HMM:PFM   984->1080 PF03461 * TRCF 8.2e-28 37.1 97/101  
:HMM:PFM   458->550 PF02559 * CarD_TRCF 4.4e-28 44.1 93/98  
:HMM:PFM   581->744 PF00270 * DEAD 5.5e-21 24.3 152/167  
:HMM:PFM   818->888 PF00271 * Helicase_C 4.5e-16 30.0 70/78  
:BLT:SWISS 1->1122 MFD_RICCN 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL03451.1 GT:GENE mfd GT:PRODUCT transcription-repair coupling factor GT:DATABASE GIB00062CH01 GT:ORG rcon0 GB:ACCESSION GIB00062CH01 GB:LOCATION complement(858737..862105) GB:FROM 858737 GB:TO 862105 GB:DIRECTION - GB:GENE mfd GB:PRODUCT transcription-repair coupling factor GB:PROTEIN_ID AAL03451.1 GB:DB_XREF GI:15620021 GB:GENE:GENE mfd LENGTH 1122 SQ:AASEQ MLQQKFPAAAKSFFAIDNFTKNLKQDFILSASNEEEALQLYKQALFFSSNENIYYFPSYNTIPYDHTSPNANILSRRAETLIKLTTNNSNSNKLLITHTANLLNKLPPKDFFSKYFLKLSPKMKFTTDELAMFLVENSFTRNASSIDVGEFAVRGEIIDIILSGPKAYRIHFSWGYIESIKEFDIDTQISTKSCRELIISPANEIVLNSETIGNFKNNYLRNFGVNHTDNALYEAVISGRKFTGYEQLLPLFYDSCSNLIDYLNDPIFIFDNLSKKAILEFEHSYNDFYSARSEANKLKFNSFYPTLSPTSLYFTASEITELLEQKNNILLTFENSEQASLIKNIAATSFIEKKTVFDKLFEVIKANSHKKIIIGSSVLSSFERIKSIIQNYEYKYNEINKLDEAKASIINVAIIPLNQSFYTKEYLFITASELLEEKPSSTNTNKKLKNILLELDNLAEGEFVVHKDHGIGQFLKLEALEIKGKPHDFLKILYAGNDKLYIPVESIEVIKKYGNDNAELDKLGSVSWQRSKAKLKKRIKEIALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLIAINDIKEDLRNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGLNIKQLSSVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHFGVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVHTSVMPYDPVIIRDALLREHFRGGRSFYVVPRIKDIEDIAKQLKQIVPELSYKIAYGKMTPSKIDEVMSEFYAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLRGRIGRGKMRGYAYLTVASHKKMTSHSLRRLEIIQNSCALGSGFTIASRDMDLRGFGNLIGEEQSGQIKEVGTELYQEMLEEQIAIFKDESIVSEQPFIPTINLGLSVFIPDNYVADAALKLGLYRRIGNLSNEIEVETFKDEMIDRFGLLPIEFNNLLDIVKIKLLCFKLNIENLDSGDNGFVIKFYKNADMTDKILKFVTTYSNQAKIKPDNKLVYIKKLVDKNIIVEANQLLWNLSEV GT:EXON 1|1-1122:0| SW:ID MFD_RICCN SW:DE RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.1.-;AltName: Full=ATP-dependent helicase mfd; SW:GN Name=mfd; OrderedLocusNames=RC0913; SW:KW ATP-binding; Complete proteome; DNA damage; DNA repair; DNA-binding;Helicase; Hydrolase; Nucleotide-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->1122|MFD_RICCN|0.0|100.0|1122/1122| GO:SWS:NREP 7 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0004386|"GO:helicase activity"|Helicase| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| SEG 80->97|tliklttnnsnsnkllit| BL:PDB:NREP 1 BL:PDB:REP 28->1121|2eyqB|e-163|33.5|1075/1143| RP:PDB:NREP 2 RP:PDB:REP 14->374|1d9zA|2e-30|18.1|349/590| RP:PDB:REP 563->1045|1cu1A|4e-44|8.4|440/645| RP:PFM:NREP 4 RP:PFM:REP 461->549|PF02559|1e-16|39.3|89/100|CarD_TRCF| RP:PFM:REP 601->747|PF00270|2e-09|30.5|141/167|DEAD| RP:PFM:REP 824->889|PF00271|7e-04|28.1|64/76|Helicase_C| RP:PFM:REP 984->1074|PF03461|4e-17|40.7|91/101|TRCF| HM:PFM:NREP 4 HM:PFM:REP 984->1080|PF03461|8.2e-28|37.1|97/101|TRCF| HM:PFM:REP 458->550|PF02559|4.4e-28|44.1|93/98|CarD_TRCF| HM:PFM:REP 581->744|PF00270|5.5e-21|24.3|152/167|DEAD| HM:PFM:REP 818->888|PF00271|4.5e-16|30.0|70/78|Helicase_C| GO:PFM:NREP 12 GO:PFM GO:0003700|"GO:transcription factor activity"|PF02559|IPR003711| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02559|IPR003711| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| GO:PFM GO:0003684|"GO:damaged DNA binding"|PF03461|IPR005118| GO:PFM GO:0004386|"GO:helicase activity"|PF03461|IPR005118| GO:PFM GO:0005524|"GO:ATP binding"|PF03461|IPR005118| GO:PFM GO:0006281|"GO:DNA repair"|PF03461|IPR005118| RP:SCP:NREP 6 RP:SCP:REP 21->323|2b2nA1|3e-56|22.2|293/308|c.37.1.19| RP:SCP:REP 357->435|2eyqA2|2e-05|15.2|79/117|c.37.1.19| RP:SCP:REP 450->523|2eyqA1|2e-23|37.8|74/80|b.34.18.1| RP:SCP:REP 524->760|2eyqA3|1e-78|46.4|233/233|c.37.1.19| RP:SCP:REP 761->969|2eyqA5|1e-67|44.5|209/211|c.37.1.19| RP:SCP:REP 969->1122|2eyqA6|2e-31|27.3|154/158|d.315.1.1| HM:SCP:REP 14->340|2eyqA4|6.8e-63|32.5|317/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 338->450|2eyqA2|5.8e-06|18.8|112/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 447->523|2eyqA1|1.4e-20|42.9|77/0|b.34.18.1|1/1|CarD-like| HM:SCP:REP 523->817|1z3iX2|4.4e-62|29.6|277/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 761->971|2eyqA5|1.7e-51|32.2|211/0|c.37.1.19|2/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 969->1124|2eyqA6|1.1e-32|35.3|156/0|d.315.1.1|1/1|TRCF domain-like| OP:NHOMO 1775 OP:NHOMOORG 900 OP:PATTERN -------------------------------------------------------------------- 2222222222222221222-22222222222222222222222222222222222222222222222222221222222221211222222232222--2222222232211111111111111122222222222222222222222222222222222222222222222222222222222222222222222222222322222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222233222222222222222223222222222222222222222122223121222222222222222222222223332222222222222222222-33333333222222222222322222222222223322222222222222222222222222211--2212222222222111112222222222222222222222222222222232222222222232222222232222222222222222222322211111111111111222222222222221111222222222222222222222223222223222222222222222322222222221-22222-1111122222222222222222-22222222222222222222222222222222222222222222222222221222222222222--22222222232222223222222222222222222322223222222222222222222222222222222222222222222222222222222222221222222222222222222---1---------------------2222222222211 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------2-1-12A2221-1224-22111---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 1112 STR:RPRED 99.1 SQ:SECSTR #########cHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHccccEEEEEccTcccccccEETTTTEEccccccccTHHHHHHHHHHHHTTTcGGGGccccccTTTccccEEEEccccccTTTHHHHTTTTTcccccccccccccccccTTccccEEccTTcccccEEEccccEcEEEcccccccccccEEEEcccccccccHHHHHHHHccTTcccccHHHHHHHHHHHHTccccccGGGGHHHHHcccccGGGccccccEEEETTHHHHHHHHHTHHHHHHGGGTTcccccHHHHHTTccccEEEEcccccHHHHTTcccEEcccccccEEcccTTcccccEEEEEccTTHHHHHHHHTTTcEEEEEEccHHHHHHHHHHHTTTTccccccccccccccccccEEEccccccEETTTEEEcccTTTcccccccccTTcccccHHHHHTTEEEcccEEEEEETTTTEEEEEETTEEEcccTTcEEEcTTccEEEEEEEcccccccEcccHHHHTcccHcHHHHHHHHHHHHHHHHHHTHTTccHHHHHTHHHHHHEEEEEEHHHHHHHHHcccccccccccccHTTccccEcTEEEEEccccccTTTHHHHHHHHHTTHHHTTTccEEEEEccHHHHHHHHHHHHHHTccccEEEccccccccHHHHHHHHHccEcccccEEEEEHHHHHTcccTTcccEEEEETTTcccHHHHHHHHHGGcccEEEEHHHHTTTTTccEEEEEEcccTTccccccTTEEEEEccccccEEETTEEEcGGGTcccEEEEEccccHHHHHHHHHHHHHHTTccEEEEcTTcccccccccccEEEEEcTTHHHHccccccEEEEccEEEEEEEEccccEEEEEEEEccHHHHHHHHTcccccccccHHHHHHHHHHHHHTccccHHHHHHHHHHHHHcTTcccccccHHHHHHHHHTcccccHHHHHHHHHHccccHHHHTHHHHHHHHHHHTTcccccccGGGGGGGGGGGGccccEEcccccccccccccEEcccHHHHHHHHHHTTccHHHHcccccccccccccEEccHHHHHTcccccccccTHcTTTEEEETTTEEEEEcccccHHHHHHHHHHHHHHHH# DISOP:02AL 1-6, 438-453, 517-526| PSIPRED cccccccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEHHHHHcccccHHHHHccEEEEEEcccccHHHHHHHHHHHccEEccccccccEEEEEccEEEEEccccccEEEEEEccEEEEEEEEEcccccEEccccEEEEcccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHccccccHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHccccHHHHHHHHHHcccEEEEEccccccccccccccccccccccHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHccccccccccHHHccccEEEEEEEEcccHHccccEEEEEcHHHHccccccccHHHHHHHHHccHHHcccccEEEEccccEEEEccEEEEEcccccEEEEEEEEccccEEEccHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHccccEEEEEcHHHHHcccccccccEEEEEcccccHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHcccEEEEEEcccccEEEEEEEEEccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHcccccEEEEEEEHHHccccccccEEEEEccccccccHHEEEEEHHccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccEEEccccccccHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccEEEEEcccEEEEEEcccccccHHHHHHHHHcccEEEEEcccEEEEEEccccHHHHHHHHHHHHHHHcc //