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Rickettsia conorii str. Malish 7 (rcon0)
Gene : rpoH
DDBJ      :rpoH         RNA polymerase sigma-32 factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  908/915 : Eukaryota  22/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13
:293 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   25->282 3dxjF PDBj 4e-19 29.1 %
:RPS:PDB   19->291 3dxjF PDBj 7e-23 23.1 %
:RPS:SCOP  19->117 1sigA  a.177.1.1 * 3e-26 40.4 %
:RPS:SCOP  229->283 1ku3A  a.4.13.2 * 3e-07 38.2 %
:HMM:SCOP  9->123 1iw7F3 a.177.1.1 * 4.9e-37 42.6 %
:HMM:SCOP  191->287 1iw7F2 a.4.13.2 * 5.2e-13 33.3 %
:RPS:PFM   53->104 PF04542 * Sigma70_r2 1e-04 40.4 %
:HMM:PFM   53->121 PF04542 * Sigma70_r2 9e-19 30.4 69/71  
:HMM:PFM   232->283 PF04545 * Sigma70_r4 1.1e-13 38.0 50/50  
:HMM:PFM   18->47 PF00140 * Sigma70_r1_2 2.3e-07 43.3 30/37  
:HMM:PFM   160->191 PF01476 * LysM 0.00022 28.1 32/44  
:BLT:SWISS 1->293 RP32_RHIRD 2e-80 52.4 %
:PROS 77->90|PS00715|SIGMA70_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL02945.1 GT:GENE rpoH GT:PRODUCT RNA polymerase sigma-32 factor GT:DATABASE GIB00062CH01 GT:ORG rcon0 GB:ACCESSION GIB00062CH01 GB:LOCATION complement(407395..408276) GB:FROM 407395 GB:TO 408276 GB:DIRECTION - GB:GENE rpoH GB:PRODUCT RNA polymerase sigma-32 factor GB:PROTEIN_ID AAL02945.1 GB:DB_XREF GI:15619475 GB:GENE:GENE rpoH LENGTH 293 SQ:AASEQ MTNNINALAISSESGFYSYLQKINKIPSLTQEEELLLAKSYLEGNDLQAAHKLVTSHLKLVAKIASGYRTYGLPITELVSEGNIGLMQAVKKFNPELGFRLSTYAMWWIKAAIQEYILKSWSLVKMGTTAAQKKLFFSLNKVKHKITNLYSRAITTDDFVQIADELGVSVNEVSEMNTRISGPDLSLNNSINSDDAESGELIELLPETRPTPEAMAINKQNSTSKRQLLSNAMKILNDRELRILTERKLTDTPKTLDILSNEYNISKERIRQIENTAFEKIKKFILNHSREAA GT:EXON 1|1-293:0| BL:SWS:NREP 1 BL:SWS:REP 1->293|RP32_RHIRD|2e-80|52.4|292/300| PROS 77->90|PS00715|SIGMA70_1|PDOC00592| BL:PDB:NREP 1 BL:PDB:REP 25->282|3dxjF|4e-19|29.1|244/349| RP:PDB:NREP 1 RP:PDB:REP 19->291|3dxjF|7e-23|23.1|264/349| RP:PFM:NREP 1 RP:PFM:REP 53->104|PF04542|1e-04|40.4|52/70|Sigma70_r2| HM:PFM:NREP 4 HM:PFM:REP 53->121|PF04542|9e-19|30.4|69/71|Sigma70_r2| HM:PFM:REP 232->283|PF04545|1.1e-13|38.0|50/50|Sigma70_r4| HM:PFM:REP 18->47|PF00140|2.3e-07|43.3|30/37|Sigma70_r1_2| HM:PFM:REP 160->191|PF01476|0.00022|28.1|32/44|LysM| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| RP:SCP:NREP 2 RP:SCP:REP 19->117|1sigA|3e-26|40.4|99/305|a.177.1.1| RP:SCP:REP 229->283|1ku3A|3e-07|38.2|55/61|a.4.13.2| HM:SCP:REP 9->123|1iw7F3|4.9e-37|42.6|115/184|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 191->287|1iw7F2|5.2e-13|33.3|93/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 2350 OP:NHOMOORG 930 OP:PATTERN -------------------------------------------------------------------- 1124222222222222222-2222222222222222223232231111122212111111332244234431111111211362234311111111111111112211141111111111111111-1111111115555611154I68566545666668786547789657555557555532-1111232644444445344445434553644445522122222224211111111111111112211111211211111111111111111111111111111111111111111111111111111111111111123533333333333324442222322213123233444222435543112324222433333224222232223233333333333-33334333333232233333333322233333343333322222222222223432222222222222212222222222222222222222222555565344545544444434556454422333232222224324333222322222222223333222232222222222334433334556557231111111111111111111111111553333433333343333333333333333332-2533322222232333333333333333-33333232333333333333333333323333333333333333323323322333333333333223233333333322333222222222222222222222222233333333353333333332222222222444433333434332222222222222222331122222222222232111111-11111111111111111112132111111231 -------1----------------------------------------------------------------------------------------------------2------------------------------------------------------------------4111B111226368-54661---5 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 274 STR:RPRED 93.5 SQ:SECSTR #################cHHHHHHHHHHTccHHHHHHHTTHHHHHHHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHTTTTccTTcHHHHHHHTTcccHHHHHHHHHHHHHHHHHHTTTcccG## DISOP:02AL 1-10, 284-293| PSIPRED ccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccc //