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Rickettsia conorii str. Malish 7 (rcon0)
Gene : thdF
DDBJ      :thdF         possible thiophene and furan oxidation protein thdF
Swiss-Prot:MNME_RICCN   RecName: Full=tRNA modification GTPase mnmE;         EC=3.6.-.-;

Homologs  Archaea  0/68 : Bacteria  857/915 : Eukaryota  171/199 : Viruses  0/175   --->[See Alignment]
a.118.1a.24.25b.34.4d.250.1
:445 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->445 1xzpA PDBj 2e-53 33.0 %
:RPS:PDB   111->305 2ahjB PDBj 2e-22 9.4 %
:RPS:SCOP  1->119 1xzpA3  d.250.1.2 * 5e-38 42.2 %
:RPS:SCOP  119->307 1ahjB  b.34.4.4 * 6e-23 9.7 %
:RPS:SCOP  330->442 2iolA1  a.118.1.14 * 1e-14 9.3 %
:HMM:SCOP  1->119 1xzpA3 d.250.1.2 * 4.5e-36 47.9 %
:HMM:SCOP  120->445 1xzpA1 a.24.25.1 * 1.5e-53 43.5 %
:RPS:PFM   3->119 PF10396 * TrmE_N 1e-27 54.8 %
:RPS:PFM   216->309 PF02421 * FeoB_N 2e-05 31.5 %
:HMM:PFM   3->119 PF10396 * TrmE_N 3.6e-41 50.4 115/115  
:HMM:PFM   227->330 PF01926 * MMR_HSR1 2.1e-21 32.0 103/108  
:BLT:SWISS 1->445 MNME_RICCN 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL03713.1 GT:GENE thdF GT:PRODUCT possible thiophene and furan oxidation protein thdF GT:DATABASE GIB00062CH01 GT:ORG rcon0 GB:ACCESSION GIB00062CH01 GB:LOCATION 1077910..1079247 GB:FROM 1077910 GB:TO 1079247 GB:DIRECTION + GB:GENE thdF GB:PRODUCT possible thiophene and furan oxidation protein thdF GB:PROTEIN_ID AAL03713.1 GB:DB_XREF GI:15620303 GB:GENE:GENE thdF LENGTH 445 SQ:AASEQ METIFAQSSAFGKAGVAVFRISGPKSLEVLQLLTGRKDFKSRLMYYQQITVPETKELIDNVMVVYFKSPGSFTGEDVVEIHTHGSKAISIMLTNALLNIAGIRLAEAGEFTKRAFLNNKFDLTAAEGIADLINAETIMQHKQAIRQASGKLEALYNNWRSQLLKMLSLLEAYIDFPDEDIPDTVLNEVTNTHTILVNTISEYLNDNRKGELLRSGLKLAIIGPPNVGKSSLLNFLMQRDIAIVSNIAGTTRDIIEGHLDIGGYPIILQDTAGIREESSDIIEQEGIKRAINSAKTADIKIIMFDAEKLDSSINEDIINLIDENTITIINKIDLIEASKIFSIENKYKCLRVSVKNNIALSSILKNIENIAENMAGFTETPYITNQRHRNYLQQALSHLTAFSLDNDLVLATEDIRMTARCIGAITGVINVEEILGEIFKNFCIGK GT:EXON 1|1-445:0| SW:ID MNME_RICCN SW:DE RecName: Full=tRNA modification GTPase mnmE; EC=3.6.-.-; SW:GN Name=mnmE; Synonyms=thdF, trmE; OrderedLocusNames=RC1175; SW:KW Complete proteome; Cytoplasm; GTP-binding; Hydrolase; Magnesium;Metal-binding; Nucleotide-binding; Potassium; tRNA processing. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->445|MNME_RICCN|0.0|100.0|445/445| GO:SWS:NREP 6 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0005525|"GO:GTP binding"|GTP-binding| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0008033|"GO:tRNA processing"|tRNA processing| SEG 312->329|inediinlidentitiin| BL:PDB:NREP 1 BL:PDB:REP 1->445|1xzpA|2e-53|33.0|440/456| RP:PDB:NREP 1 RP:PDB:REP 111->305|2ahjB|2e-22|9.4|192/211| RP:PFM:NREP 2 RP:PFM:REP 3->119|PF10396|1e-27|54.8|115/117|TrmE_N| RP:PFM:REP 216->309|PF02421|2e-05|31.5|92/188|FeoB_N| HM:PFM:NREP 2 HM:PFM:REP 3->119|PF10396|3.6e-41|50.4|115/115|TrmE_N| HM:PFM:REP 227->330|PF01926|2.1e-21|32.0|103/108|MMR_HSR1| GO:PFM:NREP 4 GO:PFM GO:0005525|"GO:GTP binding"|PF02421|IPR011619| GO:PFM GO:0015093|"GO:ferrous iron transmembrane transporter activity"|PF02421|IPR011619| GO:PFM GO:0015684|"GO:ferrous iron transport"|PF02421|IPR011619| GO:PFM GO:0016021|"GO:integral to membrane"|PF02421|IPR011619| RP:SCP:NREP 3 RP:SCP:REP 1->119|1xzpA3|5e-38|42.2|116/117|d.250.1.2| RP:SCP:REP 119->307|1ahjB|6e-23|9.7|186/212|b.34.4.4| RP:SCP:REP 330->442|2iolA1|1e-14|9.3|107/127|a.118.1.14| HM:SCP:REP 1->119|1xzpA3|4.5e-36|47.9|117/0|d.250.1.2|1/1|Folate-binding domain| HM:SCP:REP 120->445|1xzpA1|1.5e-53|43.5|170/0|a.24.25.1|1/1|TrmE connector domain| OP:NHOMO 1773 OP:NHOMOORG 1028 OP:PATTERN -------------------------------------------------------------------- 222-1--------------------------------111-----111------111-----1--1-11111-111111121132222222212222122222222222222222222222222222212222222222221112122222222222221122222122221121111111212222222122322222222222222222333322222212222222222222222221222222222222222222212222222222211-12222222222222222222222222222222223222222222222222222222222222322223222122222222222333232222242233223211112222122222222222211111111111-2222212211121111111111112112222222221222222222211122222222222222211111111111111122221111112222222222222222222222222222222222222211211122121222222221111112111112222324222222222222221221211112-22222221111122222222222222211112322222212222222222222222222112221211111122222222222222222-22222222222222222222221122222221122112222221222222211122222222222112211111111112121222222222222222222222122222222222222222222221111111111222211111222222222222223112112222222222221221222121223-33222122221222221113233222222222 11--121-1------11111111111111111111111111111111111111121111111111111111111111-1111111111-1311111----111111-1312111113-11-11121111292-112-1111111-111-111121---113-1111-111311113123F333321112131133-322 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 443 STR:RPRED 99.6 SQ:SECSTR cccEEEEcccccccccEEEEEEcccHHHHHHTEEEccccccTccEEEEEc##cccccccEEEEEETTTcccccHHHHHHHHHHHHHHHHHHHHHHHHTHHTccccccHHHcTTccccccccccTTcccccccccTTTTHHHHHHHHHHHTccccHHHHHHHHHTccHHHHHHccHHHHHHHHHHHHHTTcccHHHHHHHHTccccccccccccccccccccccccTTcEEEEcccccccccccccccGGGTTcEEEEEEEcccccccHHHHTTTccccccEEEEEEEHHHHHTTcccccEEEEEETcTTccHHHHHHHTTTccEEEEEccTTTccHHHHHHHHTTcccEEccTTTTcTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHTccccHHHHHHHHTTccTTc DISOP:02AL 201-213| PSIPRED cccEEEEccccccccEEEEEEcHHHHHHHHHHHHccccccccEEEEEEEEEcccccEEEEEEEEEEccccccccccEEEEEEcccHHHHHHHHHHHHHcccccEEcccHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccEEEEEEcccccHHHHHHHHHcccccccccccccccccEEEEEEEccEEEEEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccc //