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Rickettsia conorii str. Malish 7 (rcon0)
Gene : uvrD
DDBJ      :uvrD         DNA helicase II
Swiss-Prot:UVRD_RICCN   RecName: Full=Probable DNA helicase II homolog;         EC=3.6.1.-;

Homologs  Archaea  19/68 : Bacteria  905/915 : Eukaryota  94/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:653 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->645 3pjrA PDBj e-124 42.0 %
:RPS:PDB   6->444 3e1sA PDBj 7e-45 5.3 %
:RPS:PDB   453->649 1b77A PDBj 2e-24 8.4 %
:RPS:SCOP  6->642 1qhh.1  c.37.1.19 * 3e-75 41.4 %
:HMM:SCOP  4->637 1qhh.1 c.37.1.19 * 6.2e-162 38.3 %
:RPS:PFM   38->430 PF00580 * UvrD-helicase 1e-74 42.6 %
:RPS:PFM   431->579 PF04257 * Exonuc_V_gamma 6e-06 26.4 %
:HMM:PFM   10->493 PF00580 * UvrD-helicase 5.4e-142 37.1 483/533  
:HMM:PFM   431->580 PF04257 * Exonuc_V_gamma 3e-05 20.7 150/1016  
:BLT:SWISS 1->653 UVRD_RICCN 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL03162.1 GT:GENE uvrD GT:PRODUCT DNA helicase II GT:DATABASE GIB00062CH01 GT:ORG rcon0 GB:ACCESSION GIB00062CH01 GB:LOCATION 607454..609415 GB:FROM 607454 GB:TO 609415 GB:DIRECTION + GB:GENE uvrD GB:PRODUCT DNA helicase II GB:PROTEIN_ID AAL03162.1 GB:DB_XREF GI:15619709 GB:GENE:GENE uvrD LENGTH 653 SQ:AASEQ MQNQDFIHTLNPEQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMAERVNSLINCYGLNIGTFHSMAARILRDQIEHLNLGLNNRFTIISHDDQLKLVKDIVKLKDIDTKKYAPKLIHIIISRWKDQGLLPTKLSVSDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKNSEILRYYQEKYRYILIDEYQDTNVVQYLWARMLASLYKNICCVGDDDQSIYGWRGAEVGNILRFEKDFAGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKTLWTDRENGEKIKIISCWSDKEEARYIAGEIDKLVRENRYNAGNIAILVRAGFQTRSFEEAFINSAMPYKIIGGLRFYERMEIRDVLAYIRISLNQNDNLALERIINVPKRAIGAASLNKIRGYALERNISNFAAIKEMLEIGEIKAKSYETLKDLVTKIDNWYERFSIDAPINVVKAILDDSGYLEMLQEEKTEEAFGRIENINEMLRAIAEFNDVHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLEFDVVFLPGWEEGVFPSQRSLDEEGEKGLEEERRIAYVGITRAKKDLYITHAESRKIFYEIVRSYPSRFITEIPDEITIRTSSMKKYNSFYKF GT:EXON 1|1-653:0| SW:ID UVRD_RICCN SW:DE RecName: Full=Probable DNA helicase II homolog; EC=3.6.1.-; SW:GN Name=uvrD; OrderedLocusNames=RC0624; SW:KW ATP-binding; Complete proteome; DNA damage; DNA repair;DNA replication; DNA-binding; Helicase; Hydrolase; Nucleotide-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->653|UVRD_RICCN|0.0|100.0|653/653| GO:SWS:NREP 8 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| GO:SWS GO:0006260|"GO:DNA replication"|DNA replication| GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0004386|"GO:helicase activity"|Helicase| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| SEG 23->37|gpllllagagtgktk| SEG 117->136|ddqlklvkdivklkdidtkk| SEG 583->592|eegekgleee| BL:PDB:NREP 1 BL:PDB:REP 3->645|3pjrA|e-124|42.0|636/646| RP:PDB:NREP 2 RP:PDB:REP 6->444|3e1sA|7e-45|5.3|436/517| RP:PDB:REP 453->649|1b77A|2e-24|8.4|179/228| RP:PFM:NREP 2 RP:PFM:REP 38->430|PF00580|1e-74|42.6|390/449|UvrD-helicase| RP:PFM:REP 431->579|PF04257|6e-06|26.4|140/999|Exonuc_V_gamma| HM:PFM:NREP 2 HM:PFM:REP 10->493|PF00580|5.4e-142|37.1|483/533|UvrD-helicase| HM:PFM:REP 431->580|PF04257|3e-05|20.7|150/1016|Exonuc_V_gamma| GO:PFM:NREP 6 GO:PFM GO:0003677|"GO:DNA binding"|PF00580|IPR000212| GO:PFM GO:0004003|"GO:ATP-dependent DNA helicase activity"|PF00580|IPR000212| GO:PFM GO:0005524|"GO:ATP binding"|PF00580|IPR000212| GO:PFM GO:0006281|"GO:DNA repair"|PF00580|IPR000212| GO:PFM GO:0008854|"GO:exodeoxyribonuclease V activity"|PF04257|IPR006697| GO:PFM GO:0009338|"GO:exodeoxyribonuclease V complex"|PF04257|IPR006697| RP:SCP:NREP 1 RP:SCP:REP 6->642|1qhh.1|3e-75|41.4|613/623|c.37.1.19| HM:SCP:REP 4->637|1qhh.1|6.2e-162|38.3|613/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1958 OP:NHOMOORG 1018 OP:PATTERN --------------------------1-24123-2-----211-2122-12-2--------1----1- 1121433233333333322-22222222222222222322254433323332222223333443434343422223332232111211122111111--11211132241211111111111112-1111111222233331112111131111122111111211111211111121111112111122255322222222222223233222322211111322222222223222221222232221121221211211211111111111112222222111222222332232222222222222212222111222222233444334424223332333233434321123111114221112122222111111111222222112222211111111111-12113121131122212222222212231111211321122222222321312111111111121112211222222222111111112233233322222222222243222323234334511643222222533343343222222222222231232223322221622222222432222333333212223222222223222222222222322232422232322222222322232322321-2222221111122222222222222332-22222222222222222222222222232222222222422222222222221222222222222--2211111333332423422222222222222222222212222232233222222223233222233222223333333232322222322222222211125544452221211122211111-11111111112112211112222211111112 --11--2-311----111111111-11-------------------11-111111111-1--111121-12111111-2111111111-11111111111111111-133---------------------------------3--------------2----1---------11222181-11--113114-2----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 646 STR:RPRED 98.9 SQ:SECSTR ##TTTHHHTTcccHHHHHHHHHHHHHHHHHHTccccEEEHHHHHHHHHHHHcccHHHHHHHHHHHHHHTccEEEccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHccccccccccccccTTTTTTccHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHTTccEEEEEccHHHHHHHHHHHTccEEEHHHHTTEETTEEcccccccccccEEEEccGGGccHHHHHHHHTTccTTcEEEEEEcTTcccccccccHHHHHHHHccEEEcccccHHHHTcHHHHHHHHHHTTcccccccTTEEEEEcccTTcHHHHHHHHHHTTcGGGcEEEEcccccTTcHHHHHHHHHHHHccccccEEccccEEcTTcEEEEccccTTTTccTTcEEEEEEEccccEEEEETTEEEEEcGGGGTTEEEccEEEHHHHTTccEEEEETTTccEEEEEccTTccHHHHHHHHTTccEEEEcHHHHHHHHTcccTTccHHHHHTTEEEcccEEEccHHHHHHHHTTccTTcEEEEcTTccEEccccEEEEccccGGGccccccccccccccEETccTEEEEEcHHHH#cccHHHHHHHHHHHTTccEEEEEEETTEEcEEEEEcTTTcTTcccccEEEEEEEccccccEEEEEE#### DISOP:02AL 1-3, 639-653| PSIPRED cccHHHHccccHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHccccHHHEEEEEccHHHHHHHHHHHHHHccccccEEEcHHHHHHHHHHHHHHHHccccccccEEEcHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHccccEEEEEccccccHHHHHHHHHHHccccEEEEEEcccccccccccccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcHHHccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEEcccccccccccccccccHHHccHHHHHcccccccccccccc //