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Rickettsia conorii str. Malish 7 (rcon0)
Gene : virD4
DDBJ      :virD4        virD4 protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  194/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.2.1c.37.1
:591 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   127->556 1e9rB PDBj 4e-39 13.3 %
:RPS:SCOP  162->309 1b8pA1  c.2.1.5 * 5e-04 7.2 %
:RPS:SCOP  404->560 1e9rA  c.37.1.11 * 1e-26 18.4 %
:HMM:SCOP  102->560 1e9rA_ c.37.1.11 * 3.8e-49 23.9 %
:RPS:PFM   153->544 PF02534 * TraG 2e-86 43.7 %
:HMM:PFM   120->567 PF02534 * TraG 2.5e-168 41.8 445/469  
:BLT:SWISS 111->550 VIRD4_RHIRD 1e-62 37.1 %
:PROS 293->299|PS00307|LECTIN_LEGUME_BETA
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL02929.1 GT:GENE virD4 GT:PRODUCT virD4 protein GT:DATABASE GIB00062CH01 GT:ORG rcon0 GB:ACCESSION GIB00062CH01 GB:LOCATION 391429..393204 GB:FROM 391429 GB:TO 393204 GB:DIRECTION + GB:GENE virD4 GB:PRODUCT virD4 protein GB:PROTEIN_ID AAL02929.1 GB:DB_XREF GI:15619457 GB:GENE:GENE virD4 LENGTH 591 SQ:AASEQ MEWHKILKVTRNIFGHAIIHPVVIFCTIWISGAFVAIFTNEVGALGVNINAINIAYKWAYWLINVWGQLKIADYNYLKLKLLASLLSPAIIVIIFYIKNFERIKSLQFFKQDEKVYGDASWANPSDIEAAGLRSKKGMLIGVDAGGYFVADGFQHALLFAPTGSGKGVGFVIPNLLFWSDSVVVHDIKLENHGLTSGWREKQGQKVFVWEPSNPDGVTHCYNPIDWVSTKPGQMVDDVQKISNLIMPEKDFWNNEARSLFLGVTLYLIADPTKTKSFGEVVRTMRSDDVVYNLAVVLDTLGGVIHPVAYMNIAAFLQKADKERSGVISTMNSSLELWANPLIDSATASSDFNIQEFKKVKTTVYVGLTPDNIQRLQKLMQVFYQQATEFLSRKMPDLKEEPYGVMFLLDEFPTLGKMDTFKAGIAYFRGYRVRLFLIIQDTQQLKGTYEDAGMNSFLSNATYRITFAANNYETANLISQLVGNKTVEQRSFSKPLFFDLNIATRTQNVSQVQRALLLPQEVIQLPRDEQIVLIESFPPIKSRKIKYYEDKFFTSRLLPPTFVPTQVPFDPRANNNGASEETETITVPENNE GT:EXON 1|1-591:0| BL:SWS:NREP 1 BL:SWS:REP 111->550|VIRD4_RHIRD|1e-62|37.1|429/688| PROS 293->299|PS00307|LECTIN_LEGUME_BETA|PDOC00278| TM:NTM 3 TM:REGION 6->28| TM:REGION 33->55| TM:REGION 80->102| SEG 77->87|lklkllaslls| RP:PDB:NREP 1 RP:PDB:REP 127->556|1e9rB|4e-39|13.3|390/422| RP:PFM:NREP 1 RP:PFM:REP 153->544|PF02534|2e-86|43.7|389/431|TraG| HM:PFM:NREP 1 HM:PFM:REP 120->567|PF02534|2.5e-168|41.8|445/469|TraG| GO:PFM:NREP 2 GO:PFM GO:0009291|"GO:unidirectional conjugation"|PF02534|IPR003688| GO:PFM GO:0016020|"GO:membrane"|PF02534|IPR003688| RP:SCP:NREP 2 RP:SCP:REP 162->309|1b8pA1|5e-04|7.2|138/156|c.2.1.5| RP:SCP:REP 404->560|1e9rA|1e-26|18.4|141/420|c.37.1.11| HM:SCP:REP 102->560|1e9rA_|3.8e-49|23.9|418/433|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 313 OP:NHOMOORG 196 OP:PATTERN -------------------------------------------------------------------- ---------------------------------------------------1----------------------------21-----------------------1------------------------1----1------------------------------------------------------------------------------------1----------------------------------1---------1---------------2----------11111--1---------1----11---2-1-1--1------2-11-1111-------------1--11-----1-112--1---6--2-3111-12153-422--1----------3-----2-12633-444742263131181212-3-1--21----------44-----11111111111111111131111111111--121-----2-11-12-----1121----1--13-1-2---111112222--11--1---1---------1211------2-----1-------------------------1--2--1--11212-3-1---12--------------1----1----------------1------------2-----------1-------------------------1----1----1--------1----------------1----2------1112----------------------1-------11-11------------1------------1-1-----1----2113133---1--1----------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------2----------1------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 453 STR:RPRED 76.6 SQ:SECSTR ##################################################################################################ccccccccccccccEEEEEcccEEEHHHHHHHHHHcccccccEETTEEccGGGGGGcEEEEccTTccHHHHHHHHHHHHTTcEEEEEEETTHHHHHHHHcccccEccTTcEEEcTTcTTcccccGGGGcccccTTHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHTccHHHHHHHHHTccHHHHHHHHTTcTTTTTTcccHHHHHHHHHHHHHHHHHcHHHHHcccccccHHHHHHcTTcccEEEEEcGGGHHHHHHHHHHHHHHHHHHGGGccccTTcTTccEEEEEccGGGccccccHHHHHHHcTTTTEEEEEEEccHHHHHHHHcHHHHHHHHTTccEEEEccTTcHHHHHHHHHHHcEEEEEEEccccc#########EccEEEEEEEEcccHHHHHTccccEEEEEccccccEEEEEccccccccccccccccc############################### DISOP:02AL 395-397, 486-514, 569-579, 582-584, 586-591| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHccccccccEEEEEEccccEEEccccEEEEEEccccccHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHccEEEEEcccccccccEEcccHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHccccccHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccccHHHHHHHHHHccccEEEEEEEccHHHHHHHHcHHHHHHHHHHHcEEEEEccccHHHHHHHHHHcccEEEEEEEEEEEccccccccccccEEEEEEEccccHHHHHccccccEEEEEcccccEEEEcccHHccHHHHHHHccccccccccccccccccccccccccccccccccc //