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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF06944.1
DDBJ      :             transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  490/915 : Eukaryota  7/199 : Viruses  1/175   --->[See Alignment]
a.4.5c.94.1e.10.1
:297 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->250 3hhgG PDBj 3e-18 30.6 %
:RPS:PDB   16->201 1bi1A PDBj 2e-22 9.9 %
:RPS:SCOP  16->115 1cy0A  e.10.1.1 * 6e-15 8.7 %
:RPS:SCOP  91->287 1ixcA2  c.94.1.1 * 5e-18 10.8 %
:HMM:SCOP  1->111 1b9mA1 a.4.5.8 * 3.7e-23 35.8 %
:HMM:SCOP  83->287 1uthA_ c.94.1.1 * 1.8e-37 33.7 %
:RPS:PFM   18->62 PF00126 * HTH_1 2e-08 57.8 %
:RPS:PFM   92->278 PF03466 * LysR_substrate 1e-09 32.6 %
:HMM:PFM   88->284 PF03466 * LysR_substrate 1.6e-37 30.6 193/209  
:HMM:PFM   5->63 PF00126 * HTH_1 1.9e-23 49.2 59/60  
:BLT:SWISS 16->290 GCVA_ECOLI 5e-46 37.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF06944.1 GT:GENE ABF06944.1 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(66623..67516) GB:FROM 66623 GB:TO 67516 GB:DIRECTION - GB:PRODUCT transcriptional regulator, LysR family GB:PROTEIN_ID ABF06944.1 GB:DB_XREF GI:93352855 InterPro:IPR000847 InterPro:IPR005119 LENGTH 297 SQ:AASEQ MPALAALRTFEAAARHESFSRAATELFVTHGAVSHQIRALEEELGQQLFERRGKRVMLTTNGRLYAERVRDALLQIADATRVLQAGNRDKRLTISTMPSFAARWLTPRIGSFIEQHPELDVELLSSNSLVDFASEEVDIALRMGTGHYPGLYVERLLDDVFFPVCSPNYNGGRLPEQPAHMAGMPLLRGEGDPWKPWFEAAGLDWPEPTKGLLLQDSSLLLQAAAEGQGVALIRSSLAYNDLLSGRVVRLFDVSIPCPWLLHFVCTHASLETPKVQAFRHWLLPEMERFRNILSQWN GT:EXON 1|1-297:0| BL:SWS:NREP 1 BL:SWS:REP 16->290|GCVA_ECOLI|5e-46|37.5|275/305| SEG 3->15|alaalrtfeaaar| SEG 212->225|lllqdsslllqaaa| BL:PDB:NREP 1 BL:PDB:REP 18->250|3hhgG|3e-18|30.6|219/294| RP:PDB:NREP 1 RP:PDB:REP 16->201|1bi1A|2e-22|9.9|182/212| RP:PFM:NREP 2 RP:PFM:REP 18->62|PF00126|2e-08|57.8|45/60|HTH_1| RP:PFM:REP 92->278|PF03466|1e-09|32.6|184/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 88->284|PF03466|1.6e-37|30.6|193/209|LysR_substrate| HM:PFM:REP 5->63|PF00126|1.9e-23|49.2|59/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 16->115|1cy0A|6e-15|8.7|92/534|e.10.1.1| RP:SCP:REP 91->287|1ixcA2|5e-18|10.8|194/205|c.94.1.1| HM:SCP:REP 1->111|1b9mA1|3.7e-23|35.8|106/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 83->287|1uthA_|1.8e-37|33.7|202/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 4515 OP:NHOMOORG 498 OP:PATTERN -------------------------------------------------------------------- 2-2-1------1--1----------2-------111-344------1------2-----------1121------------21-------11-------------2-------------------1-----------22-----1151122221111-------2-7111-----111----1--------211-------------1-1-11111-11-13---1111--45-----------------------2112-------------------------------------------------------------------11111111-111-------1-1--3-3--1-2-1---21-------1--G33611111F6LIJ3359C4855564536556F-79C75H9ABd3-jQQHRaMekfQWJE3665CKA5898IK444444448CA46758-----------------------------125C837NG9PjtvrwrHGJKHccmeMNLM9L*bgQXdU-2ICKC6CBAc8I8d96F85338G622333331214C73-1-1--11-1333-2-1211---323439--1------------------------33C8G645P5AA2AABCA5DFA556CBGC8HE---3212------AA982B57885765556-8665844595858666664NLKC73957476777678676766d43333332-722333322333---2-2-11231133IFJ444627122313211EDEFH66454L4cdZaYcfSNSWSYANMP111--11-119ACOAAAAABHEDBGL7BCBA32321111-1-----------------------------------------------------13- --------------------------------------------------------------------------------------------------------------------------------------------------------------2----1------6--4-----------1--3-----4---- --------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------- STR:NPRED 275 STR:RPRED 92.6 SQ:SECSTR ###############cccHHHHHHHTTccHHHHHHHHHHHHHTTcEEEcTTccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHTTTccHHHHHHHHHHcccccccTTccEEccccHHHHTcccEEHHHHcccccEEEEEEEccGGGccccTTHHHHTTccTTcEEEEcccccEEETTEEEEccHHHHEEEEEEEEEEEEEccHHHHHHHHHHTccEEEEEGGGcHcTTTcTTcEEEEccTTcccEEEEEEEETTccccHHHHHHHHHHcTTccHHH####### DISOP:02AL 1-2,80-91,294-294,297-298| PSIPRED ccHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHcccccEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccEEEEEcccccccEEEEEEEccEEEEEccHHHHHccccccHHHHHcccccccccccHHHHHHHcccccccccccEEEccHHHHHHHHHccccEEEEcHHHHHHHHHccccEEEccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcc //