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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF07116.1
DDBJ      :             two component, sigma54 specific, transcriptional regulator, Fis family
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  707/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
a.4.1b.1.18c.1.26c.23.1c.37.1
:444 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->377 3dzdA PDBj 7e-71 40.7 %
:RPS:PDB   1->60 2dvyD PDBj 1e-05 13.3 %
:RPS:PDB   38->377 1e32A PDBj 5e-56 13.5 %
:RPS:PDB   360->444 2auwB PDBj 1e-13 12.9 %
:RPS:SCOP  6->74 1cvrA1  b.1.18.12 * 6e-08 6.1 %
:RPS:SCOP  68->344 1lt7A  c.1.26.1 * 1e-47 9.0 %
:RPS:SCOP  360->444 1ntcA  a.4.1.12 * 2e-15 27.1 %
:HMM:SCOP  5->193 1s8nA_ c.23.1.1 * 5.3e-44 42.8 %
:HMM:SCOP  147->377 1ny5A2 c.37.1.20 * 4.2e-70 42.9 %
:HMM:SCOP  359->445 1ntcA_ a.4.1.12 * 1.2e-12 29.9 %
:RPS:PFM   10->110 PF00072 * Response_reg 2e-14 33.7 %
:RPS:PFM   148->314 PF00158 * Sigma54_activat 8e-54 62.3 %
:RPS:PFM   402->442 PF02954 * HTH_8 2e-07 51.2 %
:HMM:PFM   148->314 PF00158 * Sigma54_activat 4.2e-71 59.3 167/168  
:HMM:PFM   10->119 PF00072 * Response_reg 1.5e-27 39.1 110/112  
:HMM:PFM   402->442 PF02954 * HTH_8 8.7e-13 46.3 41/42  
:BLT:SWISS 10->444 DCTD_RHIME e-109 48.2 %
:PROS 172->185|PS00675|SIGMA54_INTERACT_1
:PROS 234->249|PS00676|SIGMA54_INTERACT_2
:PROS 361->370|PS00688|SIGMA54_INTERACT_3
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF07116.1 GT:GENE ABF07116.1 GT:PRODUCT two component, sigma54 specific, transcriptional regulator, Fis family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 245002..246336 GB:FROM 245002 GB:TO 246336 GB:DIRECTION + GB:PRODUCT two component, sigma54 specific, transcriptional regulator, Fis family GB:PROTEIN_ID ABF07116.1 GB:DB_XREF GI:93353027 InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR011704 LENGTH 444 SQ:AASEQ MIAMQDGLRVLFVEDEPLVRQATAQSLELAGFSVLALPSAEAAMPHLGADFPGVLVTDVRLSGASGLDLLQHCRNAAPGVPVILVTGHGDITMAVQAMREGAYDFIEKPFGADRLTETVRRALERRALELENHALRRELAGPAAGTRIIGRSPAIAQVRDLIANVAATDVPVMINGETGTGKELVARSLHALSTRRDQPFIALNCGAVPESIFESEMFGHEAGAFTGAGKRRVGKLEHASGGTLFLDEIESMPLALQVKLLRVLQEGTLERLGSNTSIPIDVRIIAASKGDMEALVAQGTFRQDLLYRLNVVTIPLPPLRERREDIVPLFEHFMLVAAVRYQRPAPILSEMQRQQLMQRPWPGNVRELRNAADRLVLGVPEGGHAGGKADPVDESTPLRERMERYERAVIADTLARTGGAVSQAADLLQVGKATLYDKIKRYGL GT:EXON 1|1-444:0| BL:SWS:NREP 1 BL:SWS:REP 10->444|DCTD_RHIME|e-109|48.2|434/460| PROS 172->185|PS00675|SIGMA54_INTERACT_1|PDOC00579| PROS 234->249|PS00676|SIGMA54_INTERACT_2|PDOC00579| PROS 361->370|PS00688|SIGMA54_INTERACT_3|PDOC00579| SEG 114->140|rltetvrralerralelenhalrrela| BL:PDB:NREP 1 BL:PDB:REP 9->377|3dzdA|7e-71|40.7|356/366| RP:PDB:NREP 3 RP:PDB:REP 1->60|2dvyD|1e-05|13.3|60/214| RP:PDB:REP 38->377|1e32A|5e-56|13.5|327/438| RP:PDB:REP 360->444|2auwB|1e-13|12.9|85/151| RP:PFM:NREP 3 RP:PFM:REP 10->110|PF00072|2e-14|33.7|101/111|Response_reg| RP:PFM:REP 148->314|PF00158|8e-54|62.3|167/168|Sigma54_activat| RP:PFM:REP 402->442|PF02954|2e-07|51.2|41/42|HTH_8| HM:PFM:NREP 3 HM:PFM:REP 148->314|PF00158|4.2e-71|59.3|167/168|Sigma54_activat| HM:PFM:REP 10->119|PF00072|1.5e-27|39.1|110/112|Response_reg| HM:PFM:REP 402->442|PF02954|8.7e-13|46.3|41/42|HTH_8| GO:PFM:NREP 9 GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00072|IPR001789| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00072|IPR001789| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00072|IPR001789| GO:PFM GO:0005524|"GO:ATP binding"|PF00158|IPR002078| GO:PFM GO:0005622|"GO:intracellular"|PF00158|IPR002078| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00158|IPR002078| GO:PFM GO:0008134|"GO:transcription factor binding"|PF00158|IPR002078| GO:PFM GO:0003700|"GO:transcription factor activity"|PF02954|IPR002197| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02954|IPR002197| RP:SCP:NREP 3 RP:SCP:REP 6->74|1cvrA1|6e-08|6.1|66/82|b.1.18.12| RP:SCP:REP 68->344|1lt7A|1e-47|9.0|268/305|c.1.26.1| RP:SCP:REP 360->444|1ntcA|2e-15|27.1|85/91|a.4.1.12| HM:SCP:REP 5->193|1s8nA_|5.3e-44|42.8|180/190|c.23.1.1|1/1|CheY-like| HM:SCP:REP 147->377|1ny5A2|4.2e-70|42.9|231/247|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 359->445|1ntcA_|1.2e-12|29.9|87/0|a.4.1.12|1/1|Homeodomain-like| OP:NHOMO 6906 OP:NHOMOORG 722 OP:PATTERN ------------------------2----1-------------22--111------------------ ASO2--1-1121-121111-11111-11111121112121112-12---112111--2--1311214341----------2-373965999A27331--336356I5D851111111111111113338535777411-751115-1112-----111--112-11-223-----12-----1---11--161488888778587787799666588826A2711323333P4--------------------5----1-----11------2----------------------------------------1----------HJ3KDCCEDCE7D7-N445112161-1A-141bY9JE92DA5A7A112-GHG855712222GDMEF777FGBAD55455554559-CCDADDDD5B81BAAABCABEACBJK55386CDBDE66844444444B5524B8F11111122--111111111111111----26ACB57A76DSQSQRPJEEEEOOUSHIGGBFORQJNKH22EGEILCABIHHLGA88JDF9ACA22111-1576MQPDs*UORueHmZoop6hijfaanOVegijt*Lh-111-1111111111111111311-DCFBAACCKCCA8GEDDDEHHIGEGIDIIFLI--2EIBK------F9ACA76ECCFEDFGEE-CFDDGEEEDDCDFEEDEEDEEEAA886EDDCCEFFEFECGCCEBA97BABA4-766787766898---5-----3333C6RAL1112111111111123345326122U9RSSSNVVQRQSRNIRPN-----1---69EFJFFFGFINIJJ78BA9AA8883333--F13355551111111152--------------------------131111111-8B3 -1------------------------------------------------------------------------------------------------------------------------------------------------------------4----1------3--3-----------1--6-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 444 STR:RPRED 100.0 SQ:SECSTR ccEEEEcEEEEEEcccHHHHHHHHHHHHHcEEEEEccccccccEEEEEcGGGTTTccccHHHHTHHHHHTTccEEEETTcEEEEEETTEEEEEEEEEEccccEEEEcTTcccccccccccccTTcccTTcccGGGcccccHHHHHGHHHHHHHHHHcHHHHHHcccccccEEEEEccTTccHHHHHHHHHcHHHHHTTcEEEEEcHHHHTTccTTHHHHHHHHHHHHHHHHHHHHHHHTccEEEEEccGGGTccHHHHcccTTHHHHHHHHHHHHHTccccccEEEEEEEccGGGccGGGTcTTcccEEEEcccccHHHHHHHHHHTTTccccTTccHHHHHHHcTTccHHHHHHHHHHHHHHHHHHHHHHHcccccHHTcHHcTTcccHHHHHTccccccEEccEEEccHHHHTTcccccccccccEEEEccHHHHHHHHHHc DISOP:02AL 1-6| PSIPRED ccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHcccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHccccccccccccccccHHHHccccEEEEEEHHHccHHHHHHHHHHHHcccEEEcccccEEEEEEEEEEcccccHHHHHHcccccHHHHHHHcEEEEEEcccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHcc //