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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF07147.1
DDBJ      :             cytochrome c oxidase, subunit II
Swiss-Prot:             

Homologs  Archaea  17/68 : Bacteria  446/915 : Eukaryota  62/199 : Viruses  0/175   --->[See Alignment]
a.3.1b.6.1f.17.2
:422 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   47->266 1m56B PDBj 2e-45 38.2 %
:BLT:PDB   287->371 2zooA PDBj 9e-09 36.9 %
:RPS:PDB   28->266 3dtuB PDBj 9e-42 33.1 %
:RPS:PDB   291->366 3dr0A PDBj 4e-15 26.7 %
:RPS:SCOP  31->118 1ar1B2  f.17.2.1 * 2e-10 26.1 %
:RPS:SCOP  128->266 1ar1B1  b.6.1.2 * 8e-34 46.7 %
:RPS:SCOP  240->368 1mg2D  a.3.1.1 * 2e-21 17.9 %
:HMM:SCOP  21->127 1ar1B2 f.17.2.1 * 4.1e-25 27.1 %
:HMM:SCOP  122->325 1fftB1 b.6.1.2 * 5.3e-54 39.4 %
:HMM:SCOP  288->371 1cyjA_ a.3.1.1 * 2.6e-20 38.1 %
:RPS:PFM   37->118 PF02790 * COX2_TM 3e-06 32.5 %
:RPS:PFM   131->256 PF00116 * COX2 2e-33 50.4 %
:RPS:PFM   291->363 PF00034 * Cytochrom_C 6e-08 47.2 %
:HMM:PFM   131->257 PF00116 * COX2 2.4e-37 44.2 120/120  
:HMM:PFM   36->116 PF02790 * COX2_TM 2.8e-15 28.6 77/84  
:HMM:PFM   291->361 PF00034 * Cytochrom_C 3.8e-10 31.0 71/91  
:BLT:SWISS 47->266 COX2_RHOSH 5e-45 38.2 %
:BLT:SWISS 293->386 CYCA_GLUOX 4e-08 39.4 %
:PROS 202->250|PS00078|COX2
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF07147.1 GT:GENE ABF07147.1 GT:PRODUCT cytochrome c oxidase, subunit II GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 278395..279663 GB:FROM 278395 GB:TO 279663 GB:DIRECTION + GB:PRODUCT cytochrome c oxidase, subunit II GB:PROTEIN_ID ABF07147.1 GB:DB_XREF GI:93353058 InterPro:IPR001505 InterPro:IPR002429 InterPro:IPR003088 InterPro:IPR009056 InterPro:IPR011759 LENGTH 422 SQ:AASEQ MKMWKKASAACLAGASLLVSQAASAVSDMPGGPAVRQLNLAEPVTKIAEQIHWLNWMMLIICTVIFVAVFGVMFYSIFKHRKSKGARPASFHESITVEVVWTIVPFLIVIAMALPATKTVVAMKDTTNSDITIKATGYQWKWGYDYLKGQGEGISFVSTLTTPREQINNQQEKSNTYLMEVDNELVVPVNKKIRIVTTANDVIHAWMIPAFGVKQDAIPGFVRDTWFRAEKTGVYRGQCAELCGKEHAFMPIVVRVVSDAEYTKWVDDKKKAMAAAADDPNKVWTLDEIKARGEKVYATNCAVCHQPTGKGGGPFPALDGSKVVNGPKAGQMHVLLEGRNAMPSWKQLSDTELAAVMTYTRNSWGNKTGEVIQPADFTGARTGKFPEGGGAQAGAGDAAPKAAAPSSTPDKQASLAGNRVAG GT:EXON 1|1-422:0| BL:SWS:NREP 2 BL:SWS:REP 47->266|COX2_RHOSH|5e-45|38.2|217/303| BL:SWS:REP 293->386|CYCA_GLUOX|4e-08|39.4|94/478| PROS 202->250|PS00078|COX2|PDOC00075| TM:NTM 3 TM:REGION 7->29| TM:REGION 55->77| TM:REGION 93->115| SEG 7->27|asaaclagasllvsqaasavs| SEG 267->279|ddkkkamaaaadd| SEG 388->404|gggaqagagdaapkaaa| BL:PDB:NREP 2 BL:PDB:REP 47->266|1m56B|2e-45|38.2|217/260| BL:PDB:REP 287->371|2zooA|9e-09|36.9|84/438| RP:PDB:NREP 2 RP:PDB:REP 28->266|3dtuB|9e-42|33.1|236/259| RP:PDB:REP 291->366|3dr0A|4e-15|26.7|75/93| RP:PFM:NREP 3 RP:PFM:REP 37->118|PF02790|3e-06|32.5|77/82|COX2_TM| RP:PFM:REP 131->256|PF00116|2e-33|50.4|119/119|COX2| RP:PFM:REP 291->363|PF00034|6e-08|47.2|72/89|Cytochrom_C| HM:PFM:NREP 3 HM:PFM:REP 131->257|PF00116|2.4e-37|44.2|120/120|COX2| HM:PFM:REP 36->116|PF02790|2.8e-15|28.6|77/84|COX2_TM| HM:PFM:REP 291->361|PF00034|3.8e-10|31.0|71/91|Cytochrom_C| GO:PFM:NREP 11 GO:PFM GO:0004129|"GO:cytochrome-c oxidase activity"|PF02790|IPR011759| GO:PFM GO:0005507|"GO:copper ion binding"|PF02790|IPR011759| GO:PFM GO:0009055|"GO:electron carrier activity"|PF02790|IPR011759| GO:PFM GO:0016021|"GO:integral to membrane"|PF02790|IPR011759| GO:PFM GO:0022900|"GO:electron transport chain"|PF02790|IPR011759| GO:PFM GO:0004129|"GO:cytochrome-c oxidase activity"|PF00116|IPR002429| GO:PFM GO:0005507|"GO:copper ion binding"|PF00116|IPR002429| GO:PFM GO:0016020|"GO:membrane"|PF00116|IPR002429| GO:PFM GO:0005506|"GO:iron ion binding"|PF00034|IPR003088| GO:PFM GO:0009055|"GO:electron carrier activity"|PF00034|IPR003088| GO:PFM GO:0020037|"GO:heme binding"|PF00034|IPR003088| RP:SCP:NREP 3 RP:SCP:REP 31->118|1ar1B2|2e-10|26.1|88/107|f.17.2.1| RP:SCP:REP 128->266|1ar1B1|8e-34|46.7|135/145|b.6.1.2| RP:SCP:REP 240->368|1mg2D|2e-21|17.9|123/147|a.3.1.1| HM:SCP:REP 21->127|1ar1B2|4.1e-25|27.1|107/107|f.17.2.1|1/1|Cytochrome c oxidase subunit II-like, transmembrane region| HM:SCP:REP 122->325|1fftB1|5.3e-54|39.4|165/166|b.6.1.2|1/1|Cupredoxins| HM:SCP:REP 288->371|1cyjA_|2.6e-20|38.1|84/0|a.3.1.1|1/1|Cytochrome c| OP:NHOMO 726 OP:NHOMOORG 525 OP:PATTERN 11------1111111---1-1---311111-------------------------------------- 11411-11--1---1--11-1111-111111-----11111111111111111111111111111111111------------1-----------------111-11221--------------------------11111---11132211111111121-22112422211111111211212-22---121222222222222222112211221121-111111111121111111111111111--1---------------------------------------------------------------------------------------------------1---------------------1-12222-----12311331121221111111-111122432423331-211133224343111112112222111--------222-112-111111111111111111111111-111111111--332232222322222223433332222523221122321111213241321121111-------1233211-----11---111-1-1-1111-221222---------------------------11---211111111111111111111111111---31-1--------------------------------------------------------------------------------------------3111111111111---------------------------2111111211211112----------------2-----111111111111111----11--111111----------------------------------------------22- 11------1-----1--1---------111-11111-------111--------111-1---1-111---1-----1----------------1---11-1--111------11111-----1-11-1-16--11-----1--11--------1-1-------2--12--1-11-112-------1--1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 360 STR:RPRED 85.3 SQ:SECSTR ###########################cEEEcccTTcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcTTTccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEETTEEEEEEGTcTTTTEEEEEccTTcGGGTccccccHHHTTTcccccEEEETTcEEEEEEEEccccEEEEEGGGTEEEEEccTccEEEEEEccccEEEEEcccccccTTGGGccEEEEEEcHHHHHHHHHHHHHTcccccccHHHHHHHHccccccccEEEccccHHHTTcTTcEETccTTccEEETTTTEEEcHHHHHHHHHTTTccccTTcHHHHHHHHHHHHHTTTccccccEEEcccccTTccccc################################### DISOP:02AL 1-8,275-277,384-415,419-423| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccEEEEEEEEEEEEEEEEEccccccccEEEEEccHHHHccccccccccEEEcccccEEEcccccEEEEEEccHHHHHHHHHHcccccccccccHHHEEEEccccEEccccHHHHHccccccccEEEEEEcHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccEEEccccccccccccccccEEEccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHcccccccEEcHHHHHHHHccccccccccccccccccccccccccccccccccccccccc //