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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF07199.1
DDBJ      :             Excinuclease ABC subunit A
Swiss-Prot:             

Homologs  Archaea  29/68 : Bacteria  892/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
a.138.1c.37.1e.11.1
:955 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->953 2r6fA PDBj 0.0 57.7 %
:RPS:PDB   1->373 1bjtA PDBj 4e-77 9.6 %
:RPS:PDB   491->951 3dt2A PDBj 1e-30 11.3 %
:RPS:SCOP  1->400 1bgwA  e.11.1.1 * 4e-69 10.5 %
:RPS:SCOP  457->596 1l7vC  c.37.1.12 * 3e-14 26.0 %
:RPS:SCOP  611->663 1q3hA  c.37.1.12 * 2e-06 25.9 %
:RPS:SCOP  738->833 1d4cA1  a.138.1.3 * 2e-21 15.1 %
:RPS:SCOP  818->915 1ex6A  c.37.1.1 * 1e-11 13.7 %
:HMM:SCOP  1->581 1ii8.1 c.37.1.12 * 2.1e-51 24.6 %
:HMM:SCOP  623->926 1f2t.1 c.37.1.12 * 1.4e-49 24.4 %
:HMM:PFM   479->527 PF00005 * ABC_tran 2.2e-07 41.3 46/118  
:HMM:PFM   679->872 PF00005 * ABC_tran 1.5e-13 34.4 96/118  
:HMM:PFM   839->914 PF02463 * SMC_N 1.8e-05 24.0 75/220  
:HMM:PFM   649->676 PF01443 * Viral_helicase1 0.00046 52.4 21/226  
:BLT:SWISS 2->953 UVRA_NEIGO 0.0 73.9 %
:PROS 499->513|PS00211|ABC_TRANSPORTER_1
:PROS 841->855|PS00211|ABC_TRANSPORTER_1
:REPEAT 2|414->605|774->948
:REPEAT 2|4->124|625->736
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF07199.1 GT:GENE ABF07199.1 GT:PRODUCT Excinuclease ABC subunit A GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(329251..332118) GB:FROM 329251 GB:TO 332118 GB:DIRECTION - GB:PRODUCT Excinuclease ABC subunit A GB:PROTEIN_ID ABF07199.1 GB:DB_XREF GI:93353110 InterPro:IPR003439 InterPro:IPR004602 LENGTH 955 SQ:AASEQ MEEIKIRGARTHNLKNINLDLPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPYCPDHGIALQAQNVSQMVDAALALPEDTKLMILAPVVSDRKGEHTDLFDTMQAQGFVRFRIRSGGGTAHEAEAKVYDVDALPKLKKTEKHTIEVVVDRVKVRADIKQRLAESFETALRLADGRAIAMEMDTGREHVFSSRFACPICSYSLQELEPRLFSFNNPMGACPSCDGLGQITFFDPKRVVAFPNLSLASGAIKGWDRRNQFYFQMLQSLAAFYDFDTETPFEELPPEVQQVILHGSGETEIPFTYINERGRTTLRAHAFEGIIPNLERRYRETDSVAVREELAKYQNNQACPVCQGTRLRTEARHVKVGEADQARAIFEINGWPLRDALTYFLTLDLHGAKREIADKIVKEITARLNFLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDIGNSVLVVEHDEDMIRACDYVVDIGPGAGVHGGMIVAEGTPDQIESSPASLTGQYLSGQRRIEVPKTRALPDDERLLRIVNATGNNLRNVTAEIPVGLLTCVTGVSGSGKSTLINDTLYHAVARHLYGSTAEPAPHDRIEGLEHFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPSAKERGYDPGRFSFNVKGGRCESCQGDGVIKVEMHFLPDVYVPCDVCHGQRYNRETLEVLYKGKNISEVLDLTVEQAHEFFNAVPVVRRKLQTLLDVGLGYIRLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIELLLKVIHKLRDQGNTVVIIEHNLDVIKTADWLIDMGPEGGAGGGQVIAKGSPEVVAASKASFTGKYLAPLLKKQG GT:EXON 1|1-955:0| BL:SWS:NREP 1 BL:SWS:REP 2->953|UVRA_NEIGO|0.0|73.9|938/950| PROS 499->513|PS00211|ABC_TRANSPORTER_1|PDOC00185| PROS 841->855|PS00211|ABC_TRANSPORTER_1|PDOC00185| NREPEAT 2 REPEAT 2|414->605|774->948| REPEAT 2|4->124|625->736| SEG 916->924|gpeggaggg| BL:PDB:NREP 1 BL:PDB:REP 2->953|2r6fA|0.0|57.7|873/884| RP:PDB:NREP 2 RP:PDB:REP 1->373|1bjtA|4e-77|9.6|355/679| RP:PDB:REP 491->951|3dt2A|1e-30|11.3|451/621| HM:PFM:NREP 4 HM:PFM:REP 479->527|PF00005|2.2e-07|41.3|46/118|ABC_tran| HM:PFM:REP 679->872|PF00005|1.5e-13|34.4|96/118|ABC_tran| HM:PFM:REP 839->914|PF02463|1.8e-05|24.0|75/220|SMC_N| HM:PFM:REP 649->676|PF01443|0.00046|52.4|21/226|Viral_helicase1| RP:SCP:NREP 5 RP:SCP:REP 1->400|1bgwA|4e-69|10.5|351/679|e.11.1.1| RP:SCP:REP 457->596|1l7vC|3e-14|26.0|131/231|c.37.1.12| RP:SCP:REP 611->663|1q3hA|2e-06|25.9|53/265|c.37.1.12| RP:SCP:REP 738->833|1d4cA1|2e-21|15.1|93/102|a.138.1.3| RP:SCP:REP 818->915|1ex6A|1e-11|13.7|95/186|c.37.1.1| HM:SCP:REP 1->581|1ii8.1|2.1e-51|24.6|341/370|c.37.1.12|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 623->926|1f2t.1|1.4e-49|24.4|287/0|c.37.1.12|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1310 OP:NHOMOORG 926 OP:PATTERN ----------------1-1-----11111111111---1111122111-2111-------------11 2341432222222211111-12111311111124444334122233232222333213112242322244432224221122111111222223222--2222324242311111111111111222222222222222221113111111111111111111111111111111111111112121111111122222221121122122111112211122113222223231111111111111133224223133112223322332112221111111111211222222222221111111111111111111111112221333234212135111111311111111122311111111111111423111111111112111111111111111111111-221221121111111111111212111111111111111212222221112111111111111--11111111111111111111211112222222222322222224322221222323221122222322232222211111121111111111122121211111111111111113211111114412111111111111111-11111111111111211112121111111111111111112--12222------11121111111111111-11-1111111111111111111111111111111111111111111111111-111111111111--1111111111111112111211111-111111112211121111111222212223111111111111111111111111111132222221111111111111111111111111111111-1-11111111111111111112211111111223 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------1----------1--1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 955 STR:RPRED 100.0 SQ:SECSTR HHHHcccTTTcccHHHHHHHHHHHHHTccccEEHHHHHHHHHHHTcccccccHHHHHHHHHcccTTccccccEEEEccccccTTTTcTEEEETcccGGGcEEEEcTTHHHHccGGGGGGccEEEEEEccccHHHHHHHHHHHHTTccccccccccTTcccEEHEEEETTEEEEEcEEEEEEcccTTTTTcTTTEEEEEEccTTccHHHHHHHHHHHHcccTTccccccEEEEcccccccEEEEEccHHHHHHHHHHcHHHHTTcEEEEEcTTEEEEcTTccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccTTccHHHHHHHHHHTTccEEcTTccEEcccccTTHHHHHHHHHHHEcccccccccTTTcccEETTTEEEEEcHHHHHHHHHHccTTGGGccccccEHTcEEGGGccccTTcHHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHTccccccEEEccGGGHHHHHHHcccGGGcTTccHHHHHHHHHTTccccHHHHHHccHHHHHHHHcHHHHHHHHHHHTccTcccccccccccccEEHHHEEEEccccccccccTTHHHHHHHHHHHHHHHEEEHHcccEEEEEEEEcccccccccHccEEEEEEccHHHcHHHHHHHHcccTTccccGGGcEEEEEGGGTEEEEccccHHHHcTTTHHHHTHHHHHHHHHHTcEEEccEEEEHHHEEcTTccEEEEEEEccTTccHHHHHcccEEEEEcTTccEEEEccccEEEEEcTTccTTTcHHHHHHTTcccEEEccEEETTccEEcTTccccTTccEEcTTccEEcTTcccccccTTTTTcEEEEEGGGcTTccTTTTcTTcEEEEEccccccccEEEcccHHHHHHHHTcEEEccccccccTTcEEEcGGGcTTTccccHHHHHHHHHHHccc DISOP:02AL 1-1,91-92,954-956| PSIPRED ccEEEEEccEEEcccccEEEEccccEEEEEccccccccccHHHHHHHHHHHHHHHcccHHHHHHcccccccccccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHccccccccccEEEEccHHHHHHHHHccccccEEEEEccccccccccHHHHHHHHHHHccEEEEEccccccccccccEEEEccccccHHHHccccEEEEEEEEEEccccHHHHHHHHHHHHHHcccEEEEEEcccccccEEccccccccccEEcccccccccccccccccccccccccEEEEccHHHccccccccHHHcccccccccccHHHHHHHHHHHHccccccccHHHccHHHHHHHHccccccEEEEEEEcccccEEEEEEEEHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccHHHHcEEEccccccccHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHccHHHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHccEEEEccccccccccEEEEEccHHHHHHcccHHHHHHHcccccccccccccccccccEEEEccccEEEEEEEEEEEEcccEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccEEEEEEcccccccHHHHHHHHHHcccccHHHHcccHHHHHccccHHHEEEEccccccccccccEEEEEEEEEcccEEEEccccccccccHHHEEEEEEcccHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHccccccccccHHHccHHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHccEEEEEcccccccccEEEEEccHHHHHccccHHHHHHHHHHHHccc //