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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF07223.1
DDBJ      :             transcriptional regulator, IclR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  79/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.110.2
:261 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   129->215 1ysqA PDBj 1e-05 29.9 %
:RPS:PDB   95->256 3d3oA PDBj 5e-16 9.6 %
:RPS:SCOP  95->256 1mkmA2  d.110.2.2 * 1e-17 16.7 %
:HMM:SCOP  16->90 1mkmA1 a.4.5.33 * 3.6e-14 37.8 %
:HMM:SCOP  81->256 1tf1A_ d.110.2.2 * 2.9e-24 25.6 %
:RPS:PFM   136->255 PF01614 * IclR 7e-07 30.8 %
:HMM:PFM   136->235 PF01614 * IclR 5.3e-14 29.9 97/129  
:HMM:PFM   18->68 PF09339 * HTH_IclR 7.6e-14 33.3 51/52  
:BLT:SWISS 53->256 GYLR_STRCO 8e-16 28.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF07223.1 GT:GENE ABF07223.1 GT:PRODUCT transcriptional regulator, IclR family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(354847..355632) GB:FROM 354847 GB:TO 355632 GB:DIRECTION - GB:PRODUCT transcriptional regulator, IclR family GB:PROTEIN_ID ABF07223.1 GB:DB_XREF GI:93353134 InterPro:IPR005471 LENGTH 261 SQ:AASEQ MARTPGEGSGKTQRGIQSVEVGGRLLQALADARRPLPLAELAAAAQLAPAQAHTYLVSLMRLGLIKREHVDGYYEPGPLALRLGMMRLDNEPAYRAAVQRVRTLATDIGFNVAISLPTPQGPTIVHYAPAGTSLHLNLHVGTVMALATTATGRAYCAFQPESHWLPIWTQQQTPATASTLPAFLETLAAVRARGTERSIDSPSPAVSSLAMPLLDDDSTLRLVLTAIGSTGAIDVAWDGPVASALRAAIGDIARAMREGDA GT:EXON 1|1-261:0| BL:SWS:NREP 1 BL:SWS:REP 53->256|GYLR_STRCO|8e-16|28.9|201/254| SEG 24->52|rllqaladarrplplaelaaaaqlapaqa| BL:PDB:NREP 1 BL:PDB:REP 129->215|1ysqA|1e-05|29.9|87/181| RP:PDB:NREP 1 RP:PDB:REP 95->256|3d3oA|5e-16|9.6|156/167| RP:PFM:NREP 1 RP:PFM:REP 136->255|PF01614|7e-07|30.8|120/127|IclR| HM:PFM:NREP 2 HM:PFM:REP 136->235|PF01614|5.3e-14|29.9|97/129|IclR| HM:PFM:REP 18->68|PF09339|7.6e-14|33.3|51/52|HTH_IclR| RP:SCP:NREP 1 RP:SCP:REP 95->256|1mkmA2|1e-17|16.7|162/171|d.110.2.2| HM:SCP:REP 16->90|1mkmA1|3.6e-14|37.8|74/0|a.4.5.33|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 81->256|1tf1A_|2.9e-24|25.6|176/0|d.110.2.2|1/1|GAF domain-like| OP:NHOMO 125 OP:NHOMOORG 80 OP:PATTERN -------------------------------------------------------------------- --------------------------------------1----------------------------111---------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------12-1------------------1--------------------------------1----------------------1-------------------------------11--121212222221111133331111112234334--3331-1114-2-2--11----------------112--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111111------11-11211-1211-1--------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 202 STR:RPRED 77.4 SQ:SECSTR ######################################################HHHHHHHTTcEEEEEEEEETTEEEEEEEEcccETTTcTTHHHHHHHHHHHHHHHccEEEEEEEETTEEEEEEEEcccccccccccTTccccGGcHHHHHTTcHHHHHHHHHHHHHHHHHGGGTccccHHHHHHHHHHHHcEEEEEccccTTEEEEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTcc##### DISOP:02AL 1-16,258-262| PSIPRED cccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHcccEEEccccccEEEcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccEEEEEEEcccEEEEEEEEEccccEEEEEccccEEcccccHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccEEEccccccccEEEEEEEEcccccEEEEEEEEEEHHHccHHHHHHHHHHHHHHHHHHHHHHccccc //