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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF07236.1
DDBJ      :             secretion protein HlyD
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  146/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.84.1f.46.1
:320 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   39->69 2ejfC PDBj 2e-04 32.3 %
:RPS:PDB   195->260 2ejmA PDBj 2e-07 13.6 %
:RPS:SCOP  39->73,189->318 1t5eA  f.46.1.1 * 1e-09 15.4 %
:HMM:SCOP  39->91 1y8oB1 b.84.1.1 * 0.00047 37.7 %
:HMM:PFM   39->255 PF00529 * HlyD 7.8e-10 25.6 203/306  
:BLT:SWISS 216->303 YHII_ECOLI 3e-10 36.0 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF07236.1 GT:GENE ABF07236.1 GT:PRODUCT secretion protein HlyD GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(369684..370646) GB:FROM 369684 GB:TO 370646 GB:DIRECTION - GB:PRODUCT secretion protein HlyD GB:PROTEIN_ID ABF07236.1 GB:DB_XREF GI:93353147 InterPro:IPR006143 LENGTH 320 SQ:AASEQ MSYPVPRHAWSLLIMAAALAACGNDKPVSWQGYVEGEFVSVASPFAGRLEKLSVDRGQQVADGAPLFVLESDDERAARQQAAEQLRAAEAQLADIQIGKRPVEVAVTQAQLSQAQAQAQRSAAQRRRDEAQFEIGGVSRQQLDDSRATADADAARVRELQRDIDVARLPGRKDQLAAQSAQVDAARAALTQAEWKLSRKFVNATVPGLVYDVPFRPGEWVPAGSTVVRMLPVTNVKVRFYVPETVVGALKNGQAVHIRCDGCAAPVAAKITYISNEAEFTPPVIYSNETRRKLVFLIEARPDPAEAPKLRPGQPVEVTQS GT:EXON 1|1-320:0| BL:SWS:NREP 1 BL:SWS:REP 216->303|YHII_ECOLI|3e-10|36.0|86/355| COIL:NAA 82 COIL:NSEG 3 COIL:REGION 69->97| COIL:REGION 108->131| COIL:REGION 139->167| SEG 74->93|eraarqqaaeqlraaeaqla| SEG 108->131|qaqlsqaqaqaqrsaaqrrrdeaq| SEG 143->157|ddsratadadaarvr| SEG 174->188|qlaaqsaqvdaaraa| RP:PDB:NREP 2 RP:PDB:REP 39->69|2ejfC|2e-04|32.3|31/69| RP:PDB:REP 195->260|2ejmA|2e-07|13.6|66/99| HM:PFM:NREP 1 HM:PFM:REP 39->255|PF00529|7.8e-10|25.6|203/306|HlyD| RP:SCP:NREP 1 RP:SCP:REP 39->73,189->318|1t5eA|1e-09|15.4|165/231|f.46.1.1| HM:SCP:REP 39->91|1y8oB1|0.00047|37.7|53/0|b.84.1.1|1/1|Single hybrid motif| OP:NHOMO 158 OP:NHOMOORG 146 OP:PATTERN -------------------------------------------------------------------- -1-----------------------------------------------------------------------------------------------------------------------------------------------------------------1--1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------11------------1----11---1---------2-2--1-----1-1211--1-11111121211112----------12-------------11--1--1-------11111111-11--111-------------------------------1---1---12--1-1---1111-11111-11111112--111-----1-1-----11----1-------11-1---1111-11111----1111211-111-1--2----------------------------1-2---11----------1-11-111--11---------------------------------------1----------111----1------------------------------------------11111--1---1---------------------------111111-1-11----1---1-1----------1--------11-----------------------------------------------------------------------1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 101 STR:RPRED 31.6 SQ:SECSTR ######################################EEEEccccEEEEEEcccTTcEEcTTcEEEEEc#########################################################################################################################cccccccccccccccEEEEEEcccTTEEEccccEEEEEEccccEEEEEccccEEEEEEcccTTEEEcTT############################################################ DISOP:02AL 1-3,74-87,108-135,139-139| PSIPRED ccccccHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEEEcccccEEEEEEcccccEEEcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccccEEEEEEEccccEEccccEEEEEEEcccEEEEEEEcHHHHHHcccccEEEEEEEccccEEEEEEEEEEccccccccccccccccEEEEEEEEEEEccccccccccccEEEEEEc //