[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Ralstonia metallidurans CH34 (rmet0)
Gene : ABF07267.1
DDBJ      :             Endonuclease/exonuclease/phosphatase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  222/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.151.1
:251 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   1->242 1dewB PDBj 3e-20 16.9 %
:RPS:SCOP  3->242 1zwxA1  d.151.1.3 * 4e-19 17.3 %
:HMM:SCOP  1->243 1zwxA1 d.151.1.3 * 5e-48 28.4 %
:HMM:PFM   3->242 PF03372 * Exo_endo_phos 7.3e-23 18.6 236/276  
:BLT:SWISS 4->242 YBHP_SHIFL 8e-40 39.1 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF07267.1 GT:GENE ABF07267.1 GT:PRODUCT Endonuclease/exonuclease/phosphatase GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 406663..407418 GB:FROM 406663 GB:TO 407418 GB:DIRECTION + GB:PRODUCT Endonuclease/exonuclease/phosphatase GB:PROTEIN_ID ABF07267.1 GB:DB_XREF GI:93353178 InterPro:IPR005135 LENGTH 251 SQ:AASEQ MKLRVVTYNIHKGVKGFTGKPRIQSVRTGLQSMDADIVFLQEVQDRNDRLIAAELFDPDHTQLNYLATDAYPHSVYGRNAVYDHGHHGNAILSRHPILMSENLDISDHRFEQRGLLHAVADINGVEAHLICVHFGLFAGSRVRQTTALVERVRSVVPADAPLVIAGDFNDWNHKLDSKICNTLNAVESANAKNGRIHTFPSHMPWWQLDRIYARGFEFERTQALTGREWAQRSDHVPLMAELARRVAIPEV GT:EXON 1|1-251:0| BL:SWS:NREP 1 BL:SWS:REP 4->242|YBHP_SHIFL|8e-40|39.1|238/253| RP:PDB:NREP 1 RP:PDB:REP 1->242|1dewB|3e-20|16.9|225/279| HM:PFM:NREP 1 HM:PFM:REP 3->242|PF03372|7.3e-23|18.6|236/276|Exo_endo_phos| RP:SCP:NREP 1 RP:SCP:REP 3->242|1zwxA1|4e-19|17.3|237/288|d.151.1.3| HM:SCP:REP 1->243|1zwxA1|5e-48|28.4|243/0|d.151.1.3|1/1|DNase I-like| OP:NHOMO 270 OP:NHOMOORG 223 OP:PATTERN -------------------------------------------------------------------- -11-----------------------------------------------------------------1----------------------------------------1-------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------1---------------------------------11--1------------3----11111-----1-------11111111111---------111--11122121-22--------11111----------------12------------------------------11-111222222212211111221222221112122211111112222111221111221211-------112221------1--------111------11111--1------------------------------1----1------------------------1---------1111-1-1111111111-1111111111111111111111-----1111111111111111--111111-----------------1111111111---------------------------1111-11111221122211111---------------------------1-11----------------------------------------------------------------2- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 244 STR:RPRED 97.2 SQ:SECSTR ccEEEEEEEcccHEcHHHHHHHHTTHHHHHHHHcccEEEEEcccccTcHHHHHHHHHHcTTccGGGGccTTccEEEEEcccccTTcccEEEEEcccccEEEEccccTTTcccccEEEEccccEEEEEEcccccGGGTTHHHHHHHHHHHHHHHHHHHHHccEEEEEEccccccGGGcccccTTTTcTTccHHHHHHTTHHHHTcccccEEEEEcGGGGGGEEEEEEcTTccccccccEEEEEcc####### DISOP:02AL 250-252| PSIPRED cEEEEEEEEcccccccccccccHHHHHHHHHHHcccEEEEEEcccccccccccccccccccHHHHHHHHccccEEEcccccccccccEEEEEEccccEEEEEEEcccccccccEEEEEEEEEccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHcccHHHcccccccccccccccccccEEEEEccccccEEEEEEcccccccccccccEEEEEEcccccccc //