[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Ralstonia metallidurans CH34 (rmet0)
Gene : ABF07351.1
DDBJ      :             two component transcriptional regulator, winged helix family
Swiss-Prot:             

Homologs  Archaea  12/68 : Bacteria  865/915 : Eukaryota  70/199 : Viruses  0/175   --->[See Alignment]
a.4.6c.23.1
:229 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->219 2oqrA PDBj 6e-34 38.8 %
:RPS:PDB   2->216 3clmA PDBj 2e-22 10.2 %
:RPS:SCOP  1->106 1a0oA  c.23.1.1 * 1e-22 31.1 %
:RPS:SCOP  125->219 1ys6A1  a.4.6.1 * 1e-21 33.7 %
:HMM:SCOP  1->178 1s8nA_ c.23.1.1 * 1.8e-36 33.3 %
:RPS:PFM   3->103 PF00072 * Response_reg 7e-17 42.6 %
:RPS:PFM   148->216 PF00486 * Trans_reg_C 1e-09 44.8 %
:HMM:PFM   3->112 PF00072 * Response_reg 2.1e-29 33.6 110/112  
:HMM:PFM   146->218 PF00486 * Trans_reg_C 8.9e-22 39.7 73/77  
:BLT:SWISS 1->220 TCTD_SALTY 6e-44 49.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF07351.1 GT:GENE ABF07351.1 GT:PRODUCT two component transcriptional regulator, winged helix family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(494703..495392) GB:FROM 494703 GB:TO 495392 GB:DIRECTION - GB:PRODUCT two component transcriptional regulator, winged helix family GB:PROTEIN_ID ABF07351.1 GB:DB_XREF GI:93353262 InterPro:IPR001789 InterPro:IPR001867 LENGTH 229 SQ:AASEQ MRILIAEDDDVLADGLTRSLRQSGYAVDHVANGVEADSALSTQSFDLLILDLGLPRMSGLEVLKRLRARSAMVPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGAGGGATLMRHGPLAFDQVGRIAYLNEQMLDLSAREVGLLEILLTRSGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGIRIATVRGLGYCLEKYQPAVAAHG GT:EXON 1|1-229:0| BL:SWS:NREP 1 BL:SWS:REP 1->220|TCTD_SALTY|6e-44|49.3|219/224| SEG 107->124|elearvralvrrgaggga| BL:PDB:NREP 1 BL:PDB:REP 3->219|2oqrA|6e-34|38.8|214/226| RP:PDB:NREP 1 RP:PDB:REP 2->216|3clmA|2e-22|10.2|197/348| RP:PFM:NREP 2 RP:PFM:REP 3->103|PF00072|7e-17|42.6|101/111|Response_reg| RP:PFM:REP 148->216|PF00486|1e-09|44.8|67/77|Trans_reg_C| HM:PFM:NREP 2 HM:PFM:REP 3->112|PF00072|2.1e-29|33.6|110/112|Response_reg| HM:PFM:REP 146->218|PF00486|8.9e-22|39.7|73/77|Trans_reg_C| GO:PFM:NREP 7 GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00072|IPR001789| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00072|IPR001789| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00072|IPR001789| GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00486|IPR001867| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00486|IPR001867| GO:PFM GO:0003677|"GO:DNA binding"|PF00486|IPR001867| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00486|IPR001867| RP:SCP:NREP 2 RP:SCP:REP 1->106|1a0oA|1e-22|31.1|106/128|c.23.1.1| RP:SCP:REP 125->219|1ys6A1|1e-21|33.7|95/106|a.4.6.1| HM:SCP:REP 1->178|1s8nA_|1.8e-36|33.3|177/190|c.23.1.1|1/1|CheY-like| OP:NHOMO 12492 OP:NHOMOORG 947 OP:PATTERN -----------------------1-----1-----1-------12-3816422--------------- COT6P466778445CBBAA-AG55ADAAAAA9IEFF8GGDAACG99676887BBD45711HFN5R6HPLN8233354458IA636798EFZO-C22---54I4BAQ8NDK1------1111111142395468385YZZaWIACa6lQcWVUCIGDF878CC8NPIIik*I474555564544CF799233A8FTTUTUSTUHTQUWUPFNBACDSUd9CEW8GG999A99hY7AA9A99899AAA9977895B675CC645466666CC655665565DEDA66888899999999999666667777876687755477775RJKfNNNSRRUMPHEYSS8CFASIF8ACHPD6eaNDC435877677127JKEJMME66666GBQRRIEFFPGJNBB9BBBBAAAE-HJOGLQJPBOD1TMMPLINRRNJHIL8CBEBFHDGHDDBBBBBBBBBBDCA9NKE2212222222222433323323223212238DI76EIGCLWVYYcXOMMMITTaZOMONGNaXXPWWe12KQRVDJFEaKLPN5IQKFECGI81211111976FUkFmhRE9qIBtYRQW2ibmgZemJROPNSjcJRO8887666666132221222CO8AL77QM7IKMJAIHCKGLMKCLKLMMLMLKNNRP--2598A------GEEGFDCGHHHGGHIGG-HIGGGGGGGIHGGGGGGGDKKKFI999HFHHHHHHGHHGHGHHKFEFFFGGA-FGGHHHHGHHHH--2E333334545BFdCN434323255553126CB9AC6A99BMGYWZXXhgePcefcRWVY3212132126HJIQGHHHHMKMQQPRHCKCDFFD77671-X2AA898832222222312-------------------------5A444767577T3 ----43--------8----2111111-1111111111111-11111--11---2---------11-1--1--1-1------111111--12-------1-322357--2-------------------------------------------------4----3-1-------4--121-----1612F1-511C---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 224 STR:RPRED 97.8 SQ:SECSTR EHHTTcccccEEEEccGHHHHTcGGTTcHHHHHHHHHHHHHHHHHccTTEEEEEccHHHHHHHHHHHHTTccEEEEEEccHHHHHHHHHHHHHHHHHHHHTTcccTTccEEEEEEcHHHHHHHGGGHccGGGTTTHHHHHHHHHHHHHHHHHHcHHHHHHHTTTccccEEEEEcHHHHHcTTHcccccTTccTTHHHHHcccTTEEEHHHHHHHccEEcTTccT##### DISOP:02AL 220-230| PSIPRED cEEEEEcccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHcccccccEEEEccEEEEcccEEEEEccEEEcccHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccHHHHHHHHHHHccccccEEEEEcccEEEEEcccccccccc //