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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF07405.1
DDBJ      :             tyrosine recombinase XerD subunit
Swiss-Prot:             

Homologs  Archaea  41/68 : Bacteria  824/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.60.9d.163.1
:302 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->287 1a0pA PDBj 1e-68 55.4 %
:RPS:PDB   11->287 2a3vA PDBj 6e-38 25.6 %
:RPS:SCOP  11->116 1crxA1  a.60.9.1 * 3e-17 6.7 %
:RPS:SCOP  117->287 1aihA  d.163.1.1 * 9e-30 27.8 %
:HMM:SCOP  7->104 1a0pA1 a.60.9.1 * 4.1e-30 50.5 %
:HMM:SCOP  110->300 4crxA2 d.163.1.1 * 2.4e-56 44.7 %
:RPS:PFM   15->93 PF02899 * Phage_integr_N 2e-08 38.0 %
:RPS:PFM   121->286 PF00589 * Phage_integrase 2e-31 50.0 %
:HMM:PFM   116->289 PF00589 * Phage_integrase 4.3e-49 44.4 169/173  
:HMM:PFM   12->94 PF02899 * Phage_integr_N 1.2e-18 36.1 83/84  
:BLT:SWISS 12->302 XERD_RALSO e-112 67.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF07405.1 GT:GENE ABF07405.1 GT:PRODUCT tyrosine recombinase XerD subunit GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(555094..556002) GB:FROM 555094 GB:TO 556002 GB:DIRECTION - GB:PRODUCT tyrosine recombinase XerD subunit GB:PROTEIN_ID ABF07405.1 GB:DB_XREF GI:93353316 InterPro:IPR002104 InterPro:IPR004107 InterPro:IPR011932 LENGTH 302 SQ:AASEQ MTAALDGDLSLVDRFCDALWLEDGLARNTIDAYRRDLAMLARWLHESGTTALLGVDDTALSGYFAARHLETRASSANRRLTVFRRFYQWALREHMIEADPCLLLRPAKQPPRFPKTLSEAQVVALLEAPDIETPLGLRDRTMLELMYASGLRVSELTNMKTIEVGLNEGVARVVGGKGNKERLVPFGAQAGDWLHRYLSDARPTLLAGRACDELFVTQRGEGMTRQTFWHLIKKHARDAGIHAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHLHHHPRG GT:EXON 1|1-302:0| BL:SWS:NREP 1 BL:SWS:REP 12->302|XERD_RALSO|e-112|67.9|290/308| SEG 288->299|rerlrelhlhhh| BL:PDB:NREP 1 BL:PDB:REP 8->287|1a0pA|1e-68|55.4|260/271| RP:PDB:NREP 1 RP:PDB:REP 11->287|2a3vA|6e-38|25.6|266/313| RP:PFM:NREP 2 RP:PFM:REP 15->93|PF02899|2e-08|38.0|79/84|Phage_integr_N| RP:PFM:REP 121->286|PF00589|2e-31|50.0|158/168|Phage_integrase| HM:PFM:NREP 2 HM:PFM:REP 116->289|PF00589|4.3e-49|44.4|169/173|Phage_integrase| HM:PFM:REP 12->94|PF02899|1.2e-18|36.1|83/84|Phage_integr_N| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF02899|IPR004107| GO:PFM GO:0015074|"GO:DNA integration"|PF02899|IPR004107| GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 2 RP:SCP:REP 11->116|1crxA1|3e-17|6.7|105/110|a.60.9.1| RP:SCP:REP 117->287|1aihA|9e-30|27.8|144/170|d.163.1.1| HM:SCP:REP 7->104|1a0pA1|4.1e-30|50.5|97/0|a.60.9.1|1/1|lambda integrase-like, N-terminal domain| HM:SCP:REP 110->300|4crxA2|2.4e-56|44.7|188/212|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 2485 OP:NHOMOORG 866 OP:PATTERN --1111111111111-2-----------1---11111-1746411111--1---1111111111---- 23I2423222222323522-2322322222229526447A2254222322223242522243724431--222223A832221--111333222222--42839342242222222222222222232233222321331124642638-1--11-1------2--23241-------------211222333234344225245433532332223396792542222324332222222222222222222232333313322233332322221131111---111211232222221111111111111111111211148433543463445222442322233132189644B8341642222431232DC22222222223223222323222222222222-322233232G23222822JE2265222229222222322333333338222232322222222222222222222222222222-223522222D23324442222435G22322225222C7224744434323833222833322-2222222434C3322631224284232422253256622222333121111111111111111113121298252472123333469442423342924334--24323------43442334447455625-422674446245533333258582DH43223262332243335742233322-322222222222--12---------222222222222222122223333422222232232333323333386722222222223347333433334422233333332222--33442222--------322---------1------------11-11111121112A2 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 280 STR:RPRED 92.7 SQ:SECSTR #######HHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHTTcccccGGGccHHHHHHHHHHHHTTTHcccHHHHHHHHHHHHHHHHHTccccccTTccHHHcccccccccccccccHHHHHHHTTccccccHHHHHHHHHHHHHHHccccHHHHHTccGGGEETTTTEEEEEEETTTEEEEEEccGGGHHHHHHHHHHHHHHHHHHTccETTTTEEEcccccHHHHHHHHHHHHHTTcccccccHHHHHHHHHHHHHHTTccHHHHHHHHTcccHHHHGGGcccc############### DISOP:02AL 1-7,297-297,299-299,301-303| PSIPRED ccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHcccHHHccccccEEEEEccccccEEEEEccHHHHHHHHHHHHHHHHHHccccccccEEEccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccc //