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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF07414.1
DDBJ      :             transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  749/915 : Eukaryota  10/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:301 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->157 3hhgG PDBj 7e-16 34.4 %
:RPS:PDB   1->229 1b9nB PDBj 2e-27 11.3 %
:RPS:SCOP  1->105 1b9mA1  a.4.5.8 * 4e-22 17.1 %
:RPS:SCOP  89->291 1i69A  c.94.1.1 * 5e-30 23.4 %
:HMM:SCOP  1->114 1b9mA1 a.4.5.8 * 1.9e-27 50.5 %
:HMM:SCOP  84->292 1uthA_ c.94.1.1 * 1.7e-40 31.7 %
:RPS:PFM   5->63 PF00126 * HTH_1 4e-10 61.0 %
:RPS:PFM   92->290 PF03466 * LysR_substrate 2e-20 34.2 %
:HMM:PFM   90->291 PF03466 * LysR_substrate 3e-46 31.2 202/209  
:HMM:PFM   5->63 PF00126 * HTH_1 1.4e-26 61.0 59/60  
:BLT:SWISS 1->290 YFER_SHIFL 5e-65 45.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF07414.1 GT:GENE ABF07414.1 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 563893..564798 GB:FROM 563893 GB:TO 564798 GB:DIRECTION + GB:PRODUCT transcriptional regulator, LysR family GB:PROTEIN_ID ABF07414.1 GB:DB_XREF GI:93353325 InterPro:IPR000847 InterPro:IPR005119 LENGTH 301 SQ:AASEQ MNYTLRQLRVFLAVAGHGSFSRAADAVGLTQPAVSRGVAELEEALGVRLLDRTTREVVLTEAGTALVPALERLLGQLDDTLEETRQSGERYRGRVVIASAPTISARLMPMYVAACASQYPDIRLFVRDNVQADGLEQIRAGAVDFGVLIDPMAREGLTIAPLATDPFCFVCRRDHPLAEADSVPWTALHGERLVLLDFASGSRPLIDRIFARHGAVPQVVQELGHSASVFGMVEAGIGASVLPSFSLPLPEASPLVSKPLTPREERSIVMVRREDRSLSPAAAAVWNMVQTMPIPAETATG GT:EXON 1|1-301:0| BL:SWS:NREP 1 BL:SWS:REP 1->290|YFER_SHIFL|5e-65|45.2|290/308| BL:PDB:NREP 1 BL:PDB:REP 1->157|3hhgG|7e-16|34.4|154/294| RP:PDB:NREP 1 RP:PDB:REP 1->229|1b9nB|2e-27|11.3|221/245| RP:PFM:NREP 2 RP:PFM:REP 5->63|PF00126|4e-10|61.0|59/60|HTH_1| RP:PFM:REP 92->290|PF03466|2e-20|34.2|199/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 90->291|PF03466|3e-46|31.2|202/209|LysR_substrate| HM:PFM:REP 5->63|PF00126|1.4e-26|61.0|59/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->105|1b9mA1|4e-22|17.1|105/122|a.4.5.8| RP:SCP:REP 89->291|1i69A|5e-30|23.4|197/206|c.94.1.1| HM:SCP:REP 1->114|1b9mA1|1.9e-27|50.5|107/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 84->292|1uthA_|1.7e-40|31.7|208/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 11011 OP:NHOMOORG 762 OP:PATTERN -------------------------------------1----1----------1-------------- 4663M224998322E9822-25226P2222245787ANYb-A4A52321321A973-7--6551G6YHOF5-222-22226B5111112221-211---11811231214---------------1---1----1-45534---31833644534441111113439866211111111111133211---63GAAAAABBB5A9BCD993A9DHB9B2438452666665Pd12222221222222253328235256213239A33663251121-12222211-111111-1111112211221122222---111---3-53B9555556525538553222831-185722DF552212633221--2312K55611111EBXVY79DGMDHCFFFFFDGBEFW-JNQJHlKWMj91*ccRUcQ*sekfiS585GNaGCFJCQWFEFFFFFFEMPCE79E------------------------------5GO94X**n*******geghc****ljllOk*******-4qoYGJUOM*MyD*YERD8969RF44666264348HG92313351158445-4147353428758CE131-2------------------1111A9PJK89CP7HDAIIIJG8GMHDDFMFOJGQM2-13549------TJSRFRLPRSLPMKKPO-ROOOSJIOPNRLPNOOPOIjqfWR8DCVKSQUUWUVUTSWSQTrHHGGGGH7-HABBBC9BBCBB--1711111355458PPm66673B222324544OQPQSEI699eAxzyys*u*Uz**xFgfh3221212226DLKYJJJJJKPOQOKOLMQMKCCC32221-4222------------1-------------------------------------271 -------------2------------------------------------------------------------------------------------------------------------------------------------------------8----2-1----A--3-1--------1---C-----4---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 295 STR:RPRED 98.0 SQ:SECSTR EEEcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcTTccccccHHHHHHHHHTTTccccccEEEEEEEcccEEEEEETTcccEEEEEccHHHHHHHTcEEEEEEcGGGcEEEccHHHHTTccEEEEEEEEEEEEcccEEEEEEEcTTccEEEEEEEGGGcTTccTTcEEEEEEcGGGcHHHHHHTccEEEEEGGGccTTTcTTcEEEEccTcccEEEEEEEETTccccHHHHHHHHHHccHHHH###### DISOP:02AL 86-88,296-302| PSIPRED ccccHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccccEEEEccccccccEEEEEEEEccEEEEEcccccccccccccHHHHccccEEEcccccHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHccccEEEccHHHHcccccccEEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHcccccccccc //