[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Ralstonia metallidurans CH34 (rmet0)
Gene : ABF07441.1
DDBJ      :             formate dehydrogenase, alpha subunit
Swiss-Prot:             

Homologs  Archaea  55/68 : Bacteria  731/915 : Eukaryota  160/199 : Viruses  0/175   --->[See Alignment]
b.52.2c.81.1d.15.4d.58.1
:957 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   21->235 1fehA PDBj 5e-24 28.2 %
:BLT:PDB   247->927 1fdiA PDBj e-134 39.2 %
:RPS:PDB   20->228 2bs2B PDBj 3e-19 10.8 %
:RPS:PDB   249->943 1e60A PDBj e-149 19.7 %
:RPS:SCOP  20->141 1c4aA2  d.15.4.2 * 3e-23 18.9 %
:RPS:SCOP  158->235 1c4aA3  d.58.1.5 * 4e-15 34.6 %
:RPS:SCOP  248->858 1ogyA2  c.81.1.1 * e-135 23.6 %
:RPS:SCOP  840->889 1oz4A1  b.52.2.3 * 6e-14 12.0 %
:HMM:SCOP  20->144 1fehA2 d.15.4.2 * 4.5e-38 46.8 %
:HMM:SCOP  93->242 2fug34 d.58.1.5 * 5.1e-41 40.6 %
:HMM:SCOP  245->817 1kqfA2 c.81.1.1 * 1.1e-189 42.1 %
:HMM:SCOP  782->925 1kqfA1 b.52.2.2 * 1e-42 36.4 %
:RPS:PFM   101->141 PF10588 * NADH-G_4Fe-4S_3 4e-11 58.5 %
:RPS:PFM   213->232 PF00037 * Fer4 2e-04 55.0 %
:RPS:PFM   248->289 PF04879 * Molybdop_Fe4S4 7e-08 47.6 %
:RPS:PFM   300->724 PF00384 * Molybdopterin 1e-79 42.8 %
:RPS:PFM   815->918 PF01568 * Molydop_binding 1e-19 45.2 %
:HMM:PFM   300->718 PF00384 * Molybdopterin 1.1e-74 25.1 403/432  
:HMM:PFM   815->920 PF01568 * Molydop_binding 1.4e-31 41.9 105/109  
:HMM:PFM   101->141 PF10588 * NADH-G_4Fe-4S_3 1.6e-19 53.7 41/41  
:HMM:PFM   248->295 PF04879 * Molybdop_Fe4S4 3.8e-18 37.5 48/55  
:HMM:PFM   167->183 PF00037 * Fer4 2.2e-06 47.1 17/24  
:HMM:PFM   212->230 PF00037 * Fer4 1.2e-08 47.4 19/24  
:BLT:SWISS 20->923 FDHL_BACSU e-160 37.2 %
:PROS 173->184|PS00198|4FE4S_FER_1
:PROS 216->227|PS00198|4FE4S_FER_1
:PROS 248->266|PS00551|MOLYBDOPTERIN_PROK_1
:PROS 853->880|PS00932|MOLYBDOPTERIN_PROK_3

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF07441.1 GT:GENE ABF07441.1 GT:PRODUCT formate dehydrogenase, alpha subunit GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 593044..595917 GB:FROM 593044 GB:TO 595917 GB:DIRECTION + GB:PRODUCT formate dehydrogenase, alpha subunit GB:PROTEIN_ID ABF07441.1 GB:DB_XREF GI:93353352 InterPro:IPR001041 InterPro:IPR001450 InterPro:IPR006478 InterPro:IPR006655 InterPro:IPR006656 InterPro:IPR006657 InterPro:IPR006963 LENGTH 957 SQ:AASEQ MNARDDFDYGTPASDAETQVTLEIDGVSVTVPAGTSVMRAAAEAGVGVPKLCATDSLKAFGSCRLCLVEIEGRRGYPASCTTPVEAGMKVRTQSEKLGDLRRGVMELYISDHPLDCLTCPTNGNCELQDMAGVVGLREVRYNDGAGTAPPIATHTHLAKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFDSRVAAGTSQPFMESDCVSCGACVQACPTATLTETSVIQLGQASHSKITTCAYCGVGCSFKAEMKGNEVVRMVPYKDGAANEGHACVKGRFAWGYATHKDRILKPMIRARITDPWREVSWEEAIGYAASQFRRIQAEHGKDSIGGIVSSRCTNEEGYLVQKLVRAAFGNNNVDTCARVCHSPTGYGLKTTIGESAGTQTFRSVAKADVIMVIGANPTDGHPVFASRMKRRLRAGARLIVVDPRRIDLVESPHIRADYHLQLRPGTNVAVVTSIAHVIVTEGLLAEQFIAERCEDRAFQQWRDFVALPENSPEALEAETGVPAEQLRGAARLYATGGNAAIYYGLGVTEHAQGSTTVMAIANLAMATGNIGREGVGVNPLRGQNNVQGSCDIGSFPHELPGYRHVSDSTVRGSFEAAWNVEINPEPGLRIPNMFEAAITGSFRGLYCQGEDIVQSDPNTQHVAEALSSMECIVVQDIFLNETAKYAHVFLPGSSFLEKDGTFTNAERRISRVRKVMPPKAGYSDWEATILLSNALGYPMHYNHPSEIMDEIARLTPTFAGVSYKKLEELGSIQWPCNAEAPEGTPTMHVDTFVRGKGKFIITKYVPTSEKVNRKYPLILTTGRILSQYNVGAQTRRTHNVHWHDEDRLEIHPHDAEERGIKDGDWVGIQSRAGETVLRAIVSERMQPGVVYTTFHFPESGANVITTDNSDWATNCPEYKVTAVQVMPVAQPSTWQRNYHAFNEEQLAHLRAAGEPTPTR GT:EXON 1|1-957:0| BL:SWS:NREP 1 BL:SWS:REP 20->923|FDHL_BACSU|e-160|37.2|881/980| PROS 173->184|PS00198|4FE4S_FER_1|PDOC00176| PROS 216->227|PS00198|4FE4S_FER_1|PDOC00176| PROS 248->266|PS00551|MOLYBDOPTERIN_PROK_1|PDOC00392| PROS 853->880|PS00932|MOLYBDOPTERIN_PROK_3|PDOC00392| BL:PDB:NREP 2 BL:PDB:REP 21->235|1fehA|5e-24|28.2|206/574| BL:PDB:REP 247->927|1fdiA|e-134|39.2|671/714| RP:PDB:NREP 2 RP:PDB:REP 20->228|2bs2B|3e-19|10.8|194/239| RP:PDB:REP 249->943|1e60A|e-149|19.7|681/778| RP:PFM:NREP 5 RP:PFM:REP 101->141|PF10588|4e-11|58.5|41/41|NADH-G_4Fe-4S_3| RP:PFM:REP 213->232|PF00037|2e-04|55.0|20/24|Fer4| RP:PFM:REP 248->289|PF04879|7e-08|47.6|42/55|Molybdop_Fe4S4| RP:PFM:REP 300->724|PF00384|1e-79|42.8|411/423|Molybdopterin| RP:PFM:REP 815->918|PF01568|1e-19|45.2|104/112|Molydop_binding| HM:PFM:NREP 6 HM:PFM:REP 300->718|PF00384|1.1e-74|25.1|403/432|Molybdopterin| HM:PFM:REP 815->920|PF01568|1.4e-31|41.9|105/109|Molydop_binding| HM:PFM:REP 101->141|PF10588|1.6e-19|53.7|41/41|NADH-G_4Fe-4S_3| HM:PFM:REP 248->295|PF04879|3.8e-18|37.5|48/55|Molybdop_Fe4S4| HM:PFM:REP 167->183|PF00037|2.2e-06|47.1|17/24|Fer4| HM:PFM:REP 212->230|PF00037|1.2e-08|47.4|19/24|Fer4| GO:PFM:NREP 6 GO:PFM GO:0009055|"GO:electron carrier activity"|PF00037|IPR001450| GO:PFM GO:0051536|"GO:iron-sulfur cluster binding"|PF00037|IPR001450| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF04879|IPR006963| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00384|IPR006656| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF01568|IPR006657| GO:PFM GO:0030151|"GO:molybdenum ion binding"|PF01568|IPR006657| RP:SCP:NREP 4 RP:SCP:REP 20->141|1c4aA2|3e-23|18.9|122/126|d.15.4.2| RP:SCP:REP 158->235|1c4aA3|4e-15|34.6|78/83|d.58.1.5| RP:SCP:REP 248->858|1ogyA2|e-135|23.6|593/670|c.81.1.1| RP:SCP:REP 840->889|1oz4A1|6e-14|12.0|50/80|b.52.2.3| HM:SCP:REP 20->144|1fehA2|4.5e-38|46.8|124/0|d.15.4.2|1/1|2Fe-2S ferredoxin-like| HM:SCP:REP 93->242|2fug34|5.1e-41|40.6|138/0|d.58.1.5|1/1|4Fe-4S ferredoxins| HM:SCP:REP 245->817|1kqfA2|1.1e-189|42.1|561/817|c.81.1.1|1/1|Formate dehydrogenase/DMSO reductase, domains 1-3| HM:SCP:REP 782->925|1kqfA1|1e-42|36.4|143/0|b.52.2.2|1/1|ADC-like| OP:NHOMO 3478 OP:NHOMOORG 946 OP:PATTERN ---2-331212322224-1221125--151341-221133233152684-12123223443122---- 345362-1111--144333-39--4633333277875468332412--2---4351-1--22423476962--------5IC332414--1--1-----1-21-142311--------------11-2433-221346654434434332333112211121122123322------------442442213-42222222212222222355252211321--1111111311111111111111111--111---------------------------------------------------------------------176131111111213432213332-31381-36fa577C375911121--342433211111389673185947633333332324-8888888B641167766765877786412636564454544444444733-58231111111111111111111111111111122433-4442586676656666666887875876BA9B8148867645563577656525544511111111138871ECA5354685559-7A7A86777875837BI454323355131411111125A566336433245-3-45586728C988578A85CA1--2521111111B786683ABBAA85A8A-8AAB989AAAAAA8BAAA78AA7742A99A689B99999C979686687771-55456556565511111111111116256233355313221111233333232434256558664667776566111111111225581222246455332434422211112151331111--------1---------------------------2132222222351 ------1-211-1211112222121211111111112111111111-111121212221111111----1--111------11111---11111111111111122-1-12132211111111111-118A1-1211-1-3111111-111111-111113312112211-131-1121I111314116121-12---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 946 STR:RPRED 98.9 SQ:SECSTR ####ccccHHcHHcEEEEEcccEEEEEEEEccTTccHHHHHHHHHHHTcTTcccccccccccccTTEEEETTEEEEGGGccGGGcTTcEEEEEccccccTTcEEEETTEEEcHHHHHHHHHHTTccccccccccTTccccccccccccTcHHccHHHHHHHHHHHTcccccHHHHTcHHHHHcTTccHHHHHHTTccccHHHHHHHHccTTTGGGEEEHHHEEccHHHHHHHHHHHHHHHHHccTTcEEEEEEEETTEEEEEEETTEEEEEEEcccccTTcccccTTHHHHHHHHHcTTcccccEEEGTTcccEEEccHHHHHHHHHHHHHHHHHHHcGGGEccccccccccHHHHHHHHHHHTcEEEcccccTTHHHHHHHHTccccTTcccccccHHHHHHHccEEEEEcccHHHHTTcccccHHHHHHTTcEEEEEcccccHGGGHHHHHTcEEEcccTTcHHHHHHHHHHHHHHTTcccHHHHHHHEEHHHHHHHTTTTTcccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEccGGGccTTTHHHHHHHHHHHHHHTcTTcTTcEEEccTTcTcccccccTcTTccccccccGGGcccEEEGHHHGGHHHHHHcTTcEEEETTEEEEcccccEEEEEcccHHHHcccHHHHHHHGGGccEEEEEEccccHHHHTccEEEEcccGGGccEEEETTccEEEEEccccccTTcccHHHHHHHHHHHTTcHHHHHTTccHHHHHHHHHHHHHcccHHHHHHHTEEEcccccGGGccTTHHHHHTcTTcccccccccccccTTcTTccccEEEEccccccccTTcTTTcGGGGTccTTccEEEEcHHHHHTTTccTTcEEEEEccccEEEEEEEEcTTccTTEEEccTTcccccGGGTccccccTTTccccTTccEEEEEEccccccccccccccGGGcHHHHTTc####### DISOP:02AL 1-2,952-958| PSIPRED ccHHHcccccccccccccEEEEEEccEEEEEccccHHHHHHHHcccccccccccccccccccccEEEEEEccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHccccEEEEEccccccEEEcccccHHHHHHHHHHHHHHHHccccHHcccccccccccEEEEEcccccccccccccEEEcccEEEEEEEccccccccccccHHHHHHHHHHcccHHHcccEEcccccccEEEccHHHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHcccccEEccccccccHHHHHHHHHHccccccccHHHHHHccEEEEEcccHHHHcHHHHHHHHHHHHcccEEEEEEcccHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHcccccHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEcHHHHccccHHHHHHHHHHHHHHHcccccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHccccccEEEEEcccHHHHcccHHHHHHHHHcccEEEEEccccccHHHcccEEccccccccccEEEEEcccEEEEEEccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccHHHHHccccccccccHHHccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccHHHHcccccEEEEcHHHHHHHccccccEEEEEEcccEEEEEEEEEccccccEEEEEEccccccccccccccccccccccccccEEEEEEEccccccccccHHHccHHHHHHHHHcccccccc //