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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF07619.1
DDBJ      :             histone deacetylase superfamily
Swiss-Prot:             

Homologs  Archaea  50/68 : Bacteria  431/915 : Eukaryota  196/199 : Viruses  0/175   --->[See Alignment]
c.42.1
:307 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   20->305 2vqwG PDBj 5e-36 35.6 %
:RPS:PDB   2->304 3c0yC PDBj 1e-68 31.4 %
:RPS:SCOP  1->304 1t64A  c.42.1.2 * 3e-66 17.3 %
:HMM:SCOP  1->306 1t64A_ c.42.1.2 * 1.8e-103 44.6 %
:RPS:PFM   20->304 PF00850 * Hist_deacetyl 3e-61 46.8 %
:HMM:PFM   16->304 PF00850 * Hist_deacetyl 1.7e-95 45.1 286/306  
:BLT:SWISS 11->305 Y245_SYNY3 2e-50 42.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF07619.1 GT:GENE ABF07619.1 GT:PRODUCT histone deacetylase superfamily GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 811003..811926 GB:FROM 811003 GB:TO 811926 GB:DIRECTION + GB:PRODUCT histone deacetylase superfamily GB:PROTEIN_ID ABF07619.1 GB:DB_XREF GI:93353530 InterPro:IPR000286 LENGTH 307 SQ:AASEQ MSTGYYTHPSFLMHEMGHFHPECPERLQAIEDHLISHGMDGLLDRREAPAATDAQIERVHRPEYVASLVAMSPATGYHPIDPDTLMNPHTLTAARHAAGAAVAATDAVIAGELENAFCCARPPGHHAEPDRAMGFCFFDNVAIAARHALTAHGLSRVAIVDFDVHHGNGTEAAFRDDPQVLMCSFFQHPFYPYSGTEHFAPNMSNIPLPAYSNGLAVREVVETIWLPRLNEFKPEMLFISAGFDAHREDDLGQMGLVEQDYAWITQQLVDVARAHAKGRIVSCLEGGYNLSALARSVFAHLKVLVET GT:EXON 1|1-307:0| BL:SWS:NREP 1 BL:SWS:REP 11->305|Y245_SYNY3|2e-50|42.0|286/304| SEG 93->110|aarhaagaavaatdavia| BL:PDB:NREP 1 BL:PDB:REP 20->305|2vqwG|5e-36|35.6|281/382| RP:PDB:NREP 1 RP:PDB:REP 2->304|3c0yC|1e-68|31.4|299/358| RP:PFM:NREP 1 RP:PFM:REP 20->304|PF00850|3e-61|46.8|282/304|Hist_deacetyl| HM:PFM:NREP 1 HM:PFM:REP 16->304|PF00850|1.7e-95|45.1|286/306|Hist_deacetyl| RP:SCP:NREP 1 RP:SCP:REP 1->304|1t64A|3e-66|17.3|294/364|c.42.1.2| HM:SCP:REP 1->306|1t64A_|1.8e-103|44.6|296/364|c.42.1.2|1/1|Arginase/deacetylase| OP:NHOMO 2066 OP:NHOMOORG 677 OP:PATTERN 11121122333333331111111311111121--1-1-------1-225-1111111111----21-- -131-1---------11--------1----------2111111111111---111111--111-2111111-----------222111---------------1111-21--------------------------33322111121132221222211111121122222------------2112211--111111111111111111111111111111111------111111111111111111--11----------------------------------------------------------------------1------------------------------111111321121--11---2113221-----122221111122111111111112-24323212151-211122222211211-12314444326--------2-----12-----------------------------11-2--343333334341556533125555444423223-2222232221241412211111221111111-11122-2342121111111112111112-11-13233--------------------1--111111-23-2222111111-1-111-1111--1---1312-------------------------------------------111--11-----------------1----------------------------------11312-----------------------111133332534224221111---------2111-11111111111111111111------1-222222------------------------------------11--1-1---11- 3422442-822-3453443433423234424444334434243333444433431344444444455536555355555556664633-5754565665474556614D49BFBE766353795ND7F7b*G3GAD4463B799537942D21D7A7983343746284879A744AB8h9979A9AFB4989886986 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 304 STR:RPRED 99.0 SQ:SECSTR #cEEEEccGGGTTcccTTTccccTHHHHHHHHHHHHTTcGGGcEEEccccccHHHHTTTccHHHHHHHHcccTTccEEcccccEEcTTTHHHHHHHHHHHHHHHHHHHTTTcccEEEEccccccTTccTTcccTTccccHHHHHHHHHHHTTccccEEEEEccccccHHHHHHTTTcTTEEEEEEEEcTcTTccccTTccccGGcccccccccHHHHHHHHHHTHHHHHHHHcccEEEEEEccTTcTTcTTccccccHHHHHHHHHHHHHHHTTcGGGcEEEEEcccccHHHHHHHHHHHHHHHH## PSIPRED cccEEEccHHHHcccccccccccHHHHHHHHHHHHHcccHHHccEEEcccccHHHHHHcccHHHHHHHHHcccccccccccccEEEEcccHHHHHHHcccHHHHHHHHHHHHHHHHHEEEccccccccccccccEEHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHccccEEEEEEccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHHcc //