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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF07770.1
DDBJ      :             transcriptional regulator, GntR family
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  340/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.78.1
:247 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   38->214 2hs5A PDBj 8e-10 26.5 %
:RPS:PDB   13->229 3c7jA PDBj 2e-25 22.4 %
:RPS:SCOP  30->105 3bwgA1  a.4.5.6 * 1e-13 21.1 %
:RPS:SCOP  96->229 2hs5A2  a.78.1.1 * 1e-17 14.5 %
:HMM:SCOP  20->130 1v4rA1 a.4.5.6 * 1.2e-14 31.6 %
:RPS:PFM   30->90 PF00392 * GntR 2e-07 41.0 %
:RPS:PFM   100->222 PF07729 * FCD 7e-07 34.2 %
:HMM:PFM   100->223 PF07729 * FCD 1.2e-25 29.3 123/125  
:HMM:PFM   30->90 PF00392 * GntR 2.9e-16 37.7 61/64  
:BLT:SWISS 28->238 YDFH_SHIFL 3e-12 24.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF07770.1 GT:GENE ABF07770.1 GT:PRODUCT transcriptional regulator, GntR family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(968442..969185) GB:FROM 968442 GB:TO 969185 GB:DIRECTION - GB:PRODUCT transcriptional regulator, GntR family GB:PROTEIN_ID ABF07770.1 GB:DB_XREF GI:93353681 InterPro:IPR000524 InterPro:IPR011711 LENGTH 247 SQ:AASEQ MSKNLKLIAAADALPALTDNKPARKGSVEERMYHEIYDAIMEHRLPPRTKLTEHSLCEIYATARHTVRKVLSRLAADGMVDLEPNRGAFIASPSTDEAHDMFELRQMLERAVLDKLASLPNVRTVIAPLRKMVNDERQAFLTHERPRWIRLSAEFHTALAELSGNQLLVTMMRRLVSRTTLMIASVESPGHNACSFDEHDEILDALEQGDAALAQTRMAHHLGACAERVQPDEPGNFDLRSVLGRST GT:EXON 1|1-247:0| BL:SWS:NREP 1 BL:SWS:REP 28->238|YDFH_SHIFL|3e-12|24.0|208/228| BL:PDB:NREP 1 BL:PDB:REP 38->214|2hs5A|8e-10|26.5|170/205| RP:PDB:NREP 1 RP:PDB:REP 13->229|3c7jA|2e-25|22.4|210/232| RP:PFM:NREP 2 RP:PFM:REP 30->90|PF00392|2e-07|41.0|61/64|GntR| RP:PFM:REP 100->222|PF07729|7e-07|34.2|120/125|FCD| HM:PFM:NREP 2 HM:PFM:REP 100->223|PF07729|1.2e-25|29.3|123/125|FCD| HM:PFM:REP 30->90|PF00392|2.9e-16|37.7|61/64|GntR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00392|IPR000524| GO:PFM GO:0005622|"GO:intracellular"|PF00392|IPR000524| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00392|IPR000524| RP:SCP:NREP 2 RP:SCP:REP 30->105|3bwgA1|1e-13|21.1|76/78|a.4.5.6| RP:SCP:REP 96->229|2hs5A2|1e-17|14.5|131/138|a.78.1.1| HM:SCP:REP 20->130|1v4rA1|1.2e-14|31.6|98/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 1020 OP:NHOMOORG 343 OP:PATTERN ------2------------------------------------------------------------- --1--1111111-1-----------3----------35A8-1-242---11-567--1----2-2173231-----------4-----------------------------------------------------11131----1---------------------------------------111-1-3-1---------------2-22---------2---------4----------------------------------------------111-1---------------------------------------2-111----------11------1------31-44-211-1-1---1------1--------22968--12-23-33133333128-33533345C81-JAA867986DDBA3--123532423-3--------222--1-1--------------------------------5--2DB657353462222166CE54224253DBCC81343454443C3F1B8142------1111111-----2--1---1---2----2221211-1-------3-----------------------------1--1-1211-2222--12222121-21-----1--------1242-111111111111-1111111111111111111333-1-11212222222222222211111111---11111111111----------------53---1-1---------233331211-2245344365546562677-------------1----------111-1-------------------------------------------------------------1------ --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------2---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 236 STR:RPRED 95.5 SQ:SECSTR HTccTTcccccHHHHHHHccccccGGGHHHHHHHHHHHHHHTccccTTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTTEEEEcccHHHHHHHHHHHHHHHHHHHHHHHGGGccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHTEcc########### DISOP:02AL 1-31,247-248| PSIPRED cccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHcccEEEEcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccc //