[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Ralstonia metallidurans CH34 (rmet0)
Gene : ABF07796.1
DDBJ      :             sigma-24 (FecI-like)
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  88/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.177.1a.4.13
:188 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->177 1or7A PDBj 2e-05 27.4 %
:RPS:PDB   26->181 3dxjF PDBj 8e-12 11.4 %
:RPS:SCOP  5->81 1z77A2  a.121.1.1 * 2e-05 13.0 %
:RPS:SCOP  92->188 1iw7F2  a.4.13.2 * 3e-10 16.3 %
:HMM:SCOP  4->95 1or7A2 a.177.1.1 * 8.6e-07 20.9 %
:HMM:SCOP  116->183 1or7A1 a.4.13.2 * 1.7e-14 33.8 %
:RPS:PFM   129->177 PF08281 * Sigma70_r4_2 7e-07 42.9 %
:HMM:PFM   126->173 PF08281 * Sigma70_r4_2 1.7e-19 45.8 48/54  
:HMM:PFM   15->75 PF04542 * Sigma70_r2 6.3e-08 23.0 61/71  
:BLT:SWISS 6->168 RPOE_STRAW 9e-09 28.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF07796.1 GT:GENE ABF07796.1 GT:PRODUCT sigma-24 (FecI-like) GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(995862..996428) GB:FROM 995862 GB:TO 996428 GB:DIRECTION - GB:PRODUCT sigma-24 (FecI-like) GB:PROTEIN_ID ABF07796.1 GB:DB_XREF GI:93353707 InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013249 LENGTH 188 SQ:AASEQ MATDQELSDFLASVERRAFKQAVFAVRDDEAALDIVQDAMIKLAEKYGDKSAAELPPLFQRILQNTIHDWFRRQKVRNTWVTLFSNLRDEREGDDSDLLDTLEAQAGTEMAESSADKVERAQVMHIIEQEIQRLPTRQREAFLMRYWEDMDVAETAAVMGCSEGSVKTHCSRATHTLAQALRARGVRL GT:EXON 1|1-188:0| BL:SWS:NREP 1 BL:SWS:REP 6->168|RPOE_STRAW|9e-09|28.7|136/179| BL:PDB:NREP 1 BL:PDB:REP 3->177|1or7A|2e-05|27.4|157/181| RP:PDB:NREP 1 RP:PDB:REP 26->181|3dxjF|8e-12|11.4|140/349| RP:PFM:NREP 1 RP:PFM:REP 129->177|PF08281|7e-07|42.9|49/54|Sigma70_r4_2| HM:PFM:NREP 2 HM:PFM:REP 126->173|PF08281|1.7e-19|45.8|48/54|Sigma70_r4_2| HM:PFM:REP 15->75|PF04542|6.3e-08|23.0|61/71|Sigma70_r2| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF08281|IPR013249| GO:PFM GO:0003700|"GO:transcription factor activity"|PF08281|IPR013249| GO:PFM GO:0006352|"GO:transcription initiation"|PF08281|IPR013249| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08281|IPR013249| GO:PFM GO:0016987|"GO:sigma factor activity"|PF08281|IPR013249| RP:SCP:NREP 2 RP:SCP:REP 5->81|1z77A2|2e-05|13.0|77/125|a.121.1.1| RP:SCP:REP 92->188|1iw7F2|3e-10|16.3|92/100|a.4.13.2| HM:SCP:REP 4->95|1or7A2|8.6e-07|20.9|91/113|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 116->183|1or7A1|1.7e-14|33.8|68/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 99 OP:NHOMOORG 88 OP:PATTERN -------------------------------------------------------------------- --1-7------------------------------------222--------------------111--1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------11111111111111111111111111111111111111111111111-1211--------111112-------------------111-------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------1111111----------------------------------------------1111111111--------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 178 STR:RPRED 94.7 SQ:SECSTR ##HHHHHHHHHHTTcHHHHHHHHHHccccccHHHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHH###ccccccccHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHHcc##### DISOP:02AL 1-2,188-189| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccc //