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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF07900.1
DDBJ      :             DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  871/915 : Eukaryota  169/199 : Viruses  0/175   --->[See Alignment]
a.96.1
:214 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->208 2abkA PDBj 5e-75 65.9 %
:RPS:PDB   1->209 2abkA PDBj 2e-55 69.4 %
:RPS:SCOP  1->208 1ornA  a.96.1.1 * 3e-70 44.7 %
:HMM:SCOP  1->212 1xqoA_ a.96.1.6 * 4.4e-69 45.5 %
:RPS:PFM   37->163 PF00730 * HhH-GPD 6e-18 40.9 %
:HMM:PFM   34->168 PF00730 * HhH-GPD 6e-20 34.3 102/121  
:HMM:PFM   187->203 PF10576 * EndIII_4Fe-2S 0.00026 52.9 17/17  
:BLT:SWISS 1->208 END3_ECOLI 1e-74 65.9 %
:PROS 102->131|PS01155|ENDONUCLEASE_III_2

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF07900.1 GT:GENE ABF07900.1 GT:PRODUCT DNA-(apurinic or apyrimidinic site) lyase / endonuclease III GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(1103987..1104631) GB:FROM 1103987 GB:TO 1104631 GB:DIRECTION - GB:PRODUCT DNA-(apurinic or apyrimidinic site) lyase / endonuclease III GB:PROTEIN_ID ABF07900.1 GB:DB_XREF GI:93353811 InterPro:IPR000445 InterPro:IPR003265 InterPro:IPR004036 InterPro:IPR005759 LENGTH 214 SQ:AASEQ MNSAKCRAIFETLREVNPTPTTELEYSSPFELLIAVLLSAQATDVGVNKATRLLFPVAHSPQQILALGEAGLIDYIKTIGLYKTKAKHVMETCRILVEKYDGKVPPVREALESLPGVGRKTANVVLNVAFGQPTIAVDTHIFRVSNRTGLAPGKNPDAVEQKLLKVVPKEFLHDAHHWLILHGRYVCKARKPECWHCAIEPLCEFKEKTPAPKQ GT:EXON 1|1-214:0| BL:SWS:NREP 1 BL:SWS:REP 1->208|END3_ECOLI|1e-74|65.9|208/211| PROS 102->131|PS01155|ENDONUCLEASE_III_2|PDOC00615| BL:PDB:NREP 1 BL:PDB:REP 1->208|2abkA|5e-75|65.9|208/211| RP:PDB:NREP 1 RP:PDB:REP 1->209|2abkA|2e-55|69.4|209/211| RP:PFM:NREP 1 RP:PFM:REP 37->163|PF00730|6e-18|40.9|127/144|HhH-GPD| HM:PFM:NREP 2 HM:PFM:REP 34->168|PF00730|6e-20|34.3|102/121|HhH-GPD| HM:PFM:REP 187->203|PF10576|0.00026|52.9|17/17|EndIII_4Fe-2S| GO:PFM:NREP 1 GO:PFM GO:0006284|"GO:base-excision repair"|PF00730|IPR003265| RP:SCP:NREP 1 RP:SCP:REP 1->208|1ornA|3e-70|44.7|208/214|a.96.1.1| HM:SCP:REP 1->212|1xqoA_|4.4e-69|45.5|209/0|a.96.1.6|1/1|DNA-glycosylase| OP:NHOMO 1449 OP:NHOMOORG 1108 OP:PATTERN 22111111111111111121111132232222111221111111111112222111111111111111 2111211222211111111-11111111111111111111111111212---111121--1111111212111111111111122222111111111--11211111121111111111122221111111111313222222221113111122111111111113111111111111111132311121221111111111111111122222111212232222222222211111111111111222112111111-11111111121----2221111111111111111111111111111111111111111111121211111111111111111111311112111111111211111111311111222112121111111111111111111111111-3323312311121111111111111111112121221111111111111111111111111111111111111111111111112211111111111111111111111111111111111111111111211212111111121111111112211111111212331131222211112113111124321111111111111221121111112222121112214112211121121112211122--1221211-11111211211111111111-111111111111111111111121111111111111111111121111111111111111111111112222222222212211111212111112211-11111111111111111111112111111111111112222222222222212111111111111111111222211111111111-------------------------1121112111112 1111121-3111221111-1111111-111111111--11-1111111211121-11-1111111111-12111122-2211111111-1-21123-1-111111211513-111141-1211142161HI6-313----32221-1-1-21-2112-111212111111-1121212293321-2--11311132221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 209 STR:RPRED 97.7 SQ:SECSTR ccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHTTTccHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHTTcTTHHHHHHHHHHHHHHHHHHTTTcccccHHHHHHcTTccHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccGGGTTTHHHHHHHHHHHTcccccccGGGcTTGGGcccTTcc##### DISOP:02AL 1-3,211-215| PSIPRED ccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccHHccHHHHHcccccc //