[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08029.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  258/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.138.1a.28.2a.3.1
:532 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   45->152 2bgvX PDBj 1e-12 15.1 %
:RPS:PDB   127->305 3dzjA PDBj 3e-31 13.7 %
:RPS:SCOP  96->173 1ayiA  a.28.2.1 * 2e-16 11.5 %
:RPS:SCOP  247->309 1ayiA  a.28.2.1 * 6e-11 9.4 %
:RPS:SCOP  434->493 4prcC  a.138.1.2 * 6e-06 16.9 %
:HMM:SCOP  27->174 1eb7A2 a.3.1.5 * 1.7e-21 23.9 %
:HMM:SCOP  194->303 1hh7A_ a.3.1.1 * 7.4e-18 27.9 %
:HMM:SCOP  461->520 1kx2A_ a.3.1.1 * 4.4e-05 28.3 %
:HMM:PFM   48->150 PF00034 * Cytochrom_C 2.1e-07 21.6 88/91  
:HMM:PFM   199->302 PF00034 * Cytochrom_C 1.3e-06 17.4 86/91  
:BLT:SWISS 46->306 CYCG_RHOS4 3e-60 46.9 %
:BLT:SWISS 350->530 TORC_ECO57 4e-21 29.3 %
:TM
:REPEAT 2|30->153|175->305
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08029.1 GT:GENE ABF08029.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 1251129..1252727 GB:FROM 1251129 GB:TO 1252727 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID ABF08029.1 GB:DB_XREF GI:93353940 InterPro:IPR003219 InterPro:IPR009056 InterPro:IPR011031 LENGTH 532 SQ:AASEQ MKSKWSLRVVTAIVAIGIVVFLALTAPTTWRLLHASRDLPDASPPDLKNGRVMFVAGDCATCHASVGKGDDTLLGGGRSLETAFGTFHMPNISSHPNDGIGQWKLEQFIMAMREGVIPGKGNAYPAFPYTSYQRMTANDLRDLFAYMQSLPPVAGTVPDHELRFPFSMRRGVGLWRLAFLDGKPLPEVAADKSELWRRGRYLVEGAGHCVECHSPRNVAGAVPLAKRFSGGPNPEGTGYIPNITPDETGIGYWSVHDIARYLEDGVGPIGMKAGGDMKEVIENTARLSHKDRLAMAEYLKSVPAVEAPNAGAPKPNRTAEVIMLPAAHAGAGPSKLTALLASPDVIGKSDALYVVSPAPFTLEASGTAEDGKLLGATRVAVLSRDGGRMRVRVDGWQLDGSDSAVYALPGQRILQAVLSPEAIARVKRLSSIKDEHTGQQWHQASLEVWIAQKGLSADLAQLWHHSDETYRASCATCHALPHSEDFLANQWIGTLGAMKRYTSLDDAEYRLLLSWLQYHSKDVGTSSKGNHP GT:EXON 1|1-532:0| BL:SWS:NREP 2 BL:SWS:REP 46->306|CYCG_RHOS4|3e-60|46.9|256/296| BL:SWS:REP 350->530|TORC_ECO57|4e-21|29.3|181/390| TM:NTM 1 TM:REGION 5->27| NREPEAT 1 REPEAT 2|30->153|175->305| SEG 9->20|vvtaivaigivv| SEG 384->395|rdggrmrvrvdg| RP:PDB:NREP 2 RP:PDB:REP 45->152|2bgvX|1e-12|15.1|106/119| RP:PDB:REP 127->305|3dzjA|3e-31|13.7|161/252| HM:PFM:NREP 2 HM:PFM:REP 48->150|PF00034|2.1e-07|21.6|88/91|Cytochrom_C| HM:PFM:REP 199->302|PF00034|1.3e-06|17.4|86/91|Cytochrom_C| RP:SCP:NREP 3 RP:SCP:REP 96->173|1ayiA|2e-16|11.5|78/86|a.28.2.1| RP:SCP:REP 247->309|1ayiA|6e-11|9.4|63/86|a.28.2.1| RP:SCP:REP 434->493|4prcC|6e-06|16.9|59/332|a.138.1.2| HM:SCP:REP 27->174|1eb7A2|1.7e-21|23.9|142/159|a.3.1.5|1/2|Cytochrome c| HM:SCP:REP 194->303|1hh7A_|7.4e-18|27.9|104/114|a.3.1.1|2/3|Cytochrome c| HM:SCP:REP 461->520|1kx2A_|4.4e-05|28.3|60/81|a.3.1.1|3/3|Cytochrome c| OP:NHOMO 637 OP:NHOMOORG 261 OP:PATTERN -------------------------------------------------------------------- -1--------------------------------------------------------------------------------------------------------14-1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------215422--25232----------3-13-1212211--41113212321343---31-3233--15555555515541--1----------------------------------2432127BB8B75222287B7555534A793226-21111122153313-21-----1--------113--1----------------------------1---123--1-11-1-1--------------22----1--1112222131111-1122-11----1-1------11--2-12222222222-2222222222222222221111-----1111111111--1111C11-2222--3--------------------1111-----2222211-111-221-------2222-44442253-54441-------------1223222222221111--1-------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 309 STR:RPRED 58.1 SQ:SECSTR #######################ccTTTTcccccccccEEEccHHHHHHHHHHHTcccHHHHccTTTTTccccccccccGGGccccccccccTTGGGcccccTTccccHcHHHHHHHHHHcTTTTccEEEEcccHHHHHHHHHcTTccHcTTccccGGGcHHHHHHTTccHTcccccccccccccccEEccTTTTccccHHHHHHHHHHHHHHHHHHccEEEEEEccEETTTcHHHHTTTTTccTTEEEEEEEEEcccccccccGGGcHHHccTHHHHHHHHTcEEEEEEEccHHHHHHHHHccccccccccccccccTTTccccccccHHH######################################################################################################################################################################################################## DISOP:02AL 1-3,35-45,153-157,159-160,301-339,520-533| PSIPRED cccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccHHccccccccccccccccccccccccEEEccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHcccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEcccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccccccccEEcccccccccccccEEEcccccccccEEccccEEEEEEEcccEEEEEEccccccccHHHHHHccccEEEEEEEcHHHHHHHHHccEEEccccccEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHcccHHccccccHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccc //