[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08059.1
DDBJ      :             two component transcriptional regulator, winged helix family
Swiss-Prot:             

Homologs  Archaea  19/68 : Bacteria  855/915 : Eukaryota  27/199 : Viruses  0/175   --->[See Alignment]
a.4.6c.23.1
:266 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   23->249 2oqrA PDBj 5e-46 41.1 %
:RPS:PDB   25->248 3c3wB PDBj 3e-32 22.4 %
:RPS:SCOP  25->142 1a0oA  c.23.1.1 * 3e-28 25.4 %
:RPS:SCOP  154->253 1oddA  a.4.6.1 * 2e-26 33.0 %
:HMM:SCOP  21->216 1s8nA_ c.23.1.1 * 2.8e-37 32.8 %
:RPS:PFM   26->136 PF00072 * Response_reg 5e-16 42.3 %
:RPS:PFM   174->249 PF00486 * Trans_reg_C 4e-11 43.4 %
:HMM:PFM   174->250 PF00486 * Trans_reg_C 8.2e-30 46.8 77/77  
:HMM:PFM   26->136 PF00072 * Response_reg 9e-25 38.7 111/112  
:BLT:SWISS 25->253 YCLJ_BACSU 8e-49 43.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08059.1 GT:GENE ABF08059.1 GT:PRODUCT two component transcriptional regulator, winged helix family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION 1284117..1284917 GB:FROM 1284117 GB:TO 1284917 GB:DIRECTION + GB:PRODUCT two component transcriptional regulator, winged helix family GB:PROTEIN_ID ABF08059.1 GB:DB_XREF GI:93353970 InterPro:IPR001789 InterPro:IPR001867 LENGTH 266 SQ:AASEQ MADFCTIEPVQNRGPSRRTMEHAKRILLVEDDVGIANVLAMHLRDERYEVVHSADGAEGLRLLEQGGWDALVLDLMLPGVDGLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVEAMARDVRADAGSLELAGLAIDPLAREAAVDGKRLDLTPREFDLLYYFARHPDKVFSRMDLLNAVWGYQHEGYEHTVNTHINRLRTKIEVDPAQPKRILTVWRRGYRFVADPQADAAQDEGEAS GT:EXON 1|1-266:0| BL:SWS:NREP 1 BL:SWS:REP 25->253|YCLJ_BACSU|8e-49|43.6|225/227| BL:PDB:NREP 1 BL:PDB:REP 23->249|2oqrA|5e-46|41.1|224/226| RP:PDB:NREP 1 RP:PDB:REP 25->248|3c3wB|3e-32|22.4|205/210| RP:PFM:NREP 2 RP:PFM:REP 26->136|PF00072|5e-16|42.3|111/111|Response_reg| RP:PFM:REP 174->249|PF00486|4e-11|43.4|76/77|Trans_reg_C| HM:PFM:NREP 2 HM:PFM:REP 174->250|PF00486|8.2e-30|46.8|77/77|Trans_reg_C| HM:PFM:REP 26->136|PF00072|9e-25|38.7|111/112|Response_reg| GO:PFM:NREP 7 GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00072|IPR001789| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00072|IPR001789| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00072|IPR001789| GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00486|IPR001867| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00486|IPR001867| GO:PFM GO:0003677|"GO:DNA binding"|PF00486|IPR001867| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00486|IPR001867| RP:SCP:NREP 2 RP:SCP:REP 25->142|1a0oA|3e-28|25.4|118/128|c.23.1.1| RP:SCP:REP 154->253|1oddA|2e-26|33.0|100/100|a.4.6.1| HM:SCP:REP 21->216|1s8nA_|2.8e-37|32.8|189/190|c.23.1.1|1/1|CheY-like| OP:NHOMO 13131 OP:NHOMOORG 901 OP:PATTERN -----------------------23----21----1--1111122-1817323--------------- ATU7W466778655DDDCC-CH55CCCCCCCAIFHGBHHFDGHJCA687AA9EHG66811MKN7U9JUQSA444465558JC714467KKfU-G33---76L5BDW9TAN--------------242333247394bddfdI9Fh6xVohXWELMFF978B99TOILwy*P685665675655GG999452C9IWWXWXUVXIXUYYVTHLFDCEWXe9ADW8GFA99A9Akc7AA9A99899AAA9979996B675CC655466677CC655675686DED866899988888898888555556666765598766476777TKLdRRRWVVWTTLFeWW9EGCSLJ8BDGNC5hbRIA745867697328PKDJIIG66666HGVUUIFGJOIMPBBABBBBBA9F-OOSLOQMXDQB1UNNONMPVWOMIIOBECEAILHMLBEBCCCCCCCCCCBAAWIG3332333322334433354444434222237GF77EGECHVWZWcUUKKKFRRVbMLNNCOcWXTXVb12NSRYGNFEfMMQS7MRMEICFP92322212975FXgEjdOE8VOCeVKKM3lcncXegMNXTcZnpFRL9996767777333433333ET9AKBBMKBHNOQBIFEQKQRPIMLROONOQNOPVR--47B8D------FGEFFHBFGFGFGGHFF-GHGFFFFFFHGFFFFFFFELKLCG8A8FGFFFFFFFFFEFEFFKEDEEEFF81CEEEFFFEEFFF--2G333335656AGdCR444333244443115FEDEG9D88BMKYXZXXjghRadeZPVUb3212132127GHHOGGGGGKNOMNRULGMGHHIH7767--n4AA6677211-11-1312-------------------------69444666564P3 ----11--------3----1------2--------------------------1-1--------------------------------------2-212--1------2-------------------------------------------------4----2-1-------4-125------13--C2-23-C---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 265 STR:RPRED 99.6 SQ:SECSTR HHHHHHHHHHTcccccccccEEEEEEEEEcccHHHHHHHHHHHHTcTTEEEEEccHHHHHHHHHHHcccEEEEccEETTEEHHHHHHHHHHHcTTcEEEEGGGcccHHHHHHHHHHTcccHHHHHHHHHHHHHHHHHHHHHGGGcHHcHHHHHHHHHcccccHHHHHHHHHHccTTTTccHHHHHHHHHHTTTccHHHcccHHHHHHHHHHHTccHHHHHHHHHHHHHHTTcccHccHHHHHHHHHTcEEEEEEEEEEEETTEHH# DISOP:02AL 1-5,8-19,143-154,252-267| PSIPRED ccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHcccccEEcccccHHHHHHHHHHHHHHcccccccccccccEEEEccEEEEcccEEEEEccEEEEccHHHHHHHHHHHHcccccccHHHHHHHHccccccccccEEHHHHHHHHHHcccccccccEEEEEcccEEEEcccccccccccccccc //