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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08061.1
DDBJ      :             transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  474/915 : Eukaryota  6/199 : Viruses  1/175   --->[See Alignment]
a.4.5c.94.1
:299 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->246 3hhgG PDBj 9e-09 25.5 %
:RPS:PDB   1->126 1cy6A PDBj 8e-20 10.5 %
:RPS:SCOP  1->104 1b9mA1  a.4.5.8 * 3e-19 17.3 %
:RPS:SCOP  94->292 1al3A  c.94.1.1 * 2e-12 14.6 %
:HMM:SCOP  5->114 1b9mA1 a.4.5.8 * 5.2e-24 38.1 %
:HMM:SCOP  83->288 1uthA_ c.94.1.1 * 3.5e-20 24.3 %
:RPS:PFM   10->66 PF00126 * HTH_1 1e-09 57.9 %
:HMM:PFM   90->282 PF03466 * LysR_substrate 1.1e-24 25.3 190/209  
:HMM:PFM   9->66 PF00126 * HTH_1 3.4e-21 56.9 58/60  
:BLT:SWISS 6->278 AMPR_RHOCA 5e-34 34.1 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08061.1 GT:GENE ABF08061.1 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(1286349..1287248) GB:FROM 1286349 GB:TO 1287248 GB:DIRECTION - GB:PRODUCT transcriptional regulator, LysR family GB:PROTEIN_ID ABF08061.1 GB:DB_XREF GI:93353972 InterPro:IPR000847 InterPro:IPR005119 LENGTH 299 SQ:AASEQ MRTLPPMSTLRAFEATARTGSVTRAAEELFRTHGAVSRQLRQLQEHAGVELFEREGTGLRLNEHGQALYEVVRTALDQLEQGYGRLLDQARGPTLHVACSATFAMRWLVPELVDFYRLRPDIRIRLSMTSAREIRTEGADVVIAWDLSSYPAAERQRAIPLAPVAFGPVCAPAYAPEVATGARITHDFTSSAWDQWEALTGHHIAPGAGLTFPHTHLCIQAALSGLGVALIEQRLIQAELAAGTLVAPFGFTAFGGGLMAVPATRDVPADADVFIAWLQRRLLPPVDSRAPRQAGQTGA GT:EXON 1|1-299:0| BL:SWS:NREP 1 BL:SWS:REP 6->278|AMPR_RHOCA|5e-34|34.1|270/289| BL:PDB:NREP 1 BL:PDB:REP 10->246|3hhgG|9e-09|25.5|235/294| RP:PDB:NREP 1 RP:PDB:REP 1->126|1cy6A|8e-20|10.5|124/562| RP:PFM:NREP 1 RP:PFM:REP 10->66|PF00126|1e-09|57.9|57/60|HTH_1| HM:PFM:NREP 2 HM:PFM:REP 90->282|PF03466|1.1e-24|25.3|190/209|LysR_substrate| HM:PFM:REP 9->66|PF00126|3.4e-21|56.9|58/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->104|1b9mA1|3e-19|17.3|104/122|a.4.5.8| RP:SCP:REP 94->292|1al3A|2e-12|14.6|199/237|c.94.1.1| HM:SCP:REP 5->114|1b9mA1|5.2e-24|38.1|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 83->288|1uthA_|3.5e-20|24.3|202/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 3213 OP:NHOMOORG 482 OP:PATTERN -----------------------------------------------------1-------------- -1-----------------------1----------11-1-----------------1----1---312-1-----------111111-------------------------------------1---1----1-133-----1111122232111--1--11213322-111-11111-11-11--------11111211-1111211---3-21----1---------47-------------------1--1---------------------------------------------------------------------1---------1-1-111----2----3-11-221-----1--------1--92271111161DBD123583536654625355G-78E53E7E7S11UHHEGKMKMSJMG84547BD7556AJJ3333333368946367-----------------------------113C519MEDMWegehgLBBCCUUcUDECE5DqSSLNSH-1DCGA7EAAQ7J4U54A65313D51111111322498------1-112111----111-11121215---------------------------44845242A53528A79928C87849ADB4B8---42-3------92654776773643356-7655722595737665663FFG982444443424334343433P42322231-622222222222---1---------22BCF22221211111121154555221317-KLJJNQOMHLMNN5ECC11---11-1-546H56556CD9A9BH779764441-----1-------------------------------------------------------1 --------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------2----------11--1-----2---- --------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------- STR:NPRED 292 STR:RPRED 97.7 SQ:SECSTR EEEEEEEEEEccccccccHHHHHHHHHHTTcccTTTHHHHHHHHHTTTTTcEEEccccEEEcHHHHHHHHHHHHHcHHHHcHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHccGGGTccccccEEEEEcTTcccEEEEEccHHHHHHTTccTTcEEEEEccGGGcEEEccHHHHHTccEEEEEEEEEEEccccEEEEEEEcTTcEEEEcEEEEEEEcGGGTTccEEETTHHHHHHHTTcEEEEccTTcccEEEEEEETTccccHHHHHHHHHHcTTccHHHHHHHHH####### DISOP:02AL 1-2,84-94,287-300| PSIPRED ccccccHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHccccEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccEEEEEccccccccccEEEEEccHHHHHHccccccHHHHccccEEEEcccccHHHHHHHcccccccccccEEEccHHHHHHHHHccccEEEEcHHHHHHHHHccccEEEccccccccEEEEEcccccccHHHHHHHHHHHHHHccccHHHcccccccccc //