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Ralstonia metallidurans CH34 (rmet0)
Gene : ABF08091.1
DDBJ      :             transcriptional regulator, IclR family
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  426/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.110.2
:261 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->255 1mkmB PDBj 4e-29 31.4 %
:RPS:PDB   7->61 3dp7B PDBj 9e-09 18.2 %
:RPS:PDB   88->255 3d3oA PDBj 5e-27 16.8 %
:RPS:SCOP  13->87 1mkmA1  a.4.5.33 * 5e-14 22.7 %
:RPS:SCOP  87->254 1td5A  d.110.2.2 * 7e-35 28.7 %
:HMM:SCOP  13->87 1mkmA1 a.4.5.33 * 3.1e-18 44.0 %
:HMM:SCOP  70->257 1tf1A_ d.110.2.2 * 4.1e-43 41.1 %
:RPS:PFM   15->64 PF09339 * HTH_IclR 2e-04 40.0 %
:RPS:PFM   137->242 PF01614 * IclR 3e-12 42.5 %
:HMM:PFM   131->251 PF01614 * IclR 2.4e-33 40.5 121/129  
:HMM:PFM   16->65 PF09339 * HTH_IclR 8.5e-18 40.0 50/52  
:BLT:SWISS 13->255 YAGI_ECOLI 1e-29 31.8 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABF08091.1 GT:GENE ABF08091.1 GT:PRODUCT transcriptional regulator, IclR family GT:DATABASE GIB00349CH01 GT:ORG rmet0 GB:ACCESSION GIB00349CH01 GB:LOCATION complement(1324582..1325367) GB:FROM 1324582 GB:TO 1325367 GB:DIRECTION - GB:PRODUCT transcriptional regulator, IclR family GB:PROTEIN_ID ABF08091.1 GB:DB_XREF GI:93354002 InterPro:IPR005471 LENGTH 261 SQ:AASEQ MAEADKSPGKTSIQVIERMMTLLDALAQHADPVSLKELSLATGLHPSTAHRILNDMVACRFVDRSDPGSYRLGMRLLELGNLVKARLSVRDAALAPMRALHRVTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADEGARVRNYATRTGLAGHTRTSITDISKLERELTWVRSNGYARDNEELELGVRCIAAGIYDDSRRLVAGLSLSAPADRLQDSWLQNLKDTALQISRGMGYVPEPTA GT:EXON 1|1-261:0| BL:SWS:NREP 1 BL:SWS:REP 13->255|YAGI_ECOLI|1e-29|31.8|242/252| BL:PDB:NREP 1 BL:PDB:REP 13->255|1mkmB|4e-29|31.4|242/247| RP:PDB:NREP 2 RP:PDB:REP 7->61|3dp7B|9e-09|18.2|55/350| RP:PDB:REP 88->255|3d3oA|5e-27|16.8|161/167| RP:PFM:NREP 2 RP:PFM:REP 15->64|PF09339|2e-04|40.0|50/52|HTH_IclR| RP:PFM:REP 137->242|PF01614|3e-12|42.5|106/127|IclR| HM:PFM:NREP 2 HM:PFM:REP 131->251|PF01614|2.4e-33|40.5|121/129|IclR| HM:PFM:REP 16->65|PF09339|8.5e-18|40.0|50/52|HTH_IclR| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF09339|IPR005471| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF09339|IPR005471| RP:SCP:NREP 2 RP:SCP:REP 13->87|1mkmA1|5e-14|22.7|75/75|a.4.5.33| RP:SCP:REP 87->254|1td5A|7e-35|28.7|167/179|d.110.2.2| HM:SCP:REP 13->87|1mkmA1|3.1e-18|44.0|75/0|a.4.5.33|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 70->257|1tf1A_|4.1e-43|41.1|180/0|d.110.2.2|1/1|GAF domain-like| OP:NHOMO 1673 OP:NHOMOORG 431 OP:PATTERN ------------------------A--32-64------------------------------------ --41811344711133223-27--2G22222185679CYW2316564-1112IDI512--21517AL8B821111343----6--111-----1------------------------------------------22211----3-------------------------------------5421311-41111111132221111253331112113343--------51--------------------1-1-11----------1-----------------------------------------------------12--2-----------2--1--------1----11-11-1325-1-2---------------21523--82212133333332325-122--311B4--555334554564921--348111244411111111311-------------------------------------6--3HEBB789D8968885AAHF787826C4LEIG71176322643C482F51211---------------212-1----1--------242254411-----------1---------------------11--2-1-3-2----------1--------------1-1------422423-7446766645-4564656454475666667777231216265646666656555843344431-212222222222----------------461112-2--1-1111133333-31236-43231334333431323-------------2------1112--11111111------------------------------------------------------112111--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 256 STR:RPRED 98.1 SQ:SECSTR cHHHHHHHHHHHHHHHHHHHHHHHHHTTcTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEEEETTEEEEEEEEcccEEccHcHHHHHHHHHHHHHHHHccEEEEEEEETTEEEEEEEEccccccccccccTTccccGGcHHHHHTTcHHHHHHHHHHHHHHccHHHHHGGGTccccHHHHHHHHHHHHcEEEEEccccTTEEEEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTTccccc##### DISOP:02AL 1-16,258-262| PSIPRED cccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEcccccEEEcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEEEccEEEEEEEEEcccccEEEEEccccEEcHHccHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccEEEccccccccEEEEEEEEcccccEEEEEEEEEEHHHccHHHHHHHHHHHHHHHHHccccccccc //